DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7896 and ltl

DIOPT Version :9

Sequence 1:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster
Sequence 2:NP_001261524.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster


Alignment Length:961 Identity:196/961 - (20%)
Similarity:338/961 - (35%) Gaps:339/961 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 HLNLSSNMLQQLDYTHMQVVRSLES---------LDISRNTITTITPGTFREMGALKY-LDLSLN 362
            |:.||...|:..:    .||.||.:         |.|:.:.:..:...:|.:|....| |.:..|
  Fly    35 HVELSCEKLESFN----AVVDSLANKLNADTNIDLKITHSQLDDLEMRSFTDMNFNLYKLRMQWN 95

  Fly   363 SLRTIEDDALEGLDSLQTLIIKDNNILLVPGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGD 427
            ||:::.:....||.::..|.|.||::..:|..||..:|.|.:|.:...::.|:..|....:|.  
  Fly    96 SLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQR-- 158

  Fly   428 ITTLSLSRNVIRELPPGSFQMFSSLHTLDLSGNSLAVINAD--TFAGLESTLMALKLSQNRLTGL 490
            :|.|.|..|:|..|..|||.  .||..|.|..|.|..:|..  ....|||    |.::.|.:|.|
  Fly   159 VTNLILVSNIITRLDRGSFP--KSLLILHLGRNQLESLNGSLHDLHNLES----LFINANNITSL 217

  Fly   491 ------GGAPWVLPELRSLDLSGNTLTELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQ 549
                  ||      :||.|....|.|..||:            |::|.|             .|:
  Fly   218 DDELPDGG------QLRLLMAHNNRLERLPA------------NMAGMH-------------SLE 251

  Fly   550 VIDLSGCNIRQISGDLLAGLQDLKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAF 614
            .:.:. ||..:....:|....:|..:..::|:|:.|....|.:...:.::.:..|.|.|:.| :.
  Fly   252 TVHIH-CNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNS-SL 314

  Fly   615 VNVMKLQKLDLHGNQLSAFKGEYFNTGTGIEELDISDNQLSYLFPSSFRIHPR-LREIRAANNKF 678
            :.::||:..:...|.:..|.....:....::.|.:|.|::..|.|.     || ::|:...|   
  Fly   315 LPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPD-----PRGVQELMLVN--- 371

  Fly   679 SFFPAELISTLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQIL 743
                            :||.:|::.::... .|.|..||:|.:|.|:|:           .||:.
  Fly   372 ----------------LDLDNNRIDSLNGA-LAGLGNLRILNLAGNRLE-----------HLQVG 408

  Fly   744 DLAHNNLDRIGERTFEGLVRLEQLNLEGNRLSELSDGVFERTKLQMLENINLAHNR-------FE 801
            |             |:|::||:.|:|.||:|:||..  .|.|.|..|:.:.:|:|.       |:
  Fly   409 D-------------FDGMIRLDILDLTGNQLAELKP--LEMTLLPSLKILKVAYNNITKLEQDFK 458

  Fly   802 YAPL----NALQRQFFFVSSVDLSHNKIK--ELPGDDSIMVNIKRIDLSFNPLSSKAVHNVLNEP 860
            ..|:    |....|...:||..:::.:.|  .:||.       ..|.|..||:......|.|...
  Fly   459 GLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGK-------LEIHLDDNPIMCDVGLNELCRL 516

  Fly   861 KTVRELSLAGTG--IENLELLET--PFLQFLNLSHNKLKNVKPEVFQRVTLLETLDLSSNQLESL 921
            ..|:|..:.|..  .||.:.:.|  |.|..:||.               .::..|.|:..::.. 
  Fly   517 MAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLP---------------IMVTNLKLTGREVPK- 565

  Fly   922 EDLSMAWPQLQVL-QSLDVSNNSFEIVSQSNFGKLEMLRSLRLSHLPQCTRIEKNAFKQLPNLVS 985
                   |.::|: .||..:||                                           
  Fly   566 -------PMVRVIVPSLIKANN------------------------------------------- 580

  Fly   986 LEAYDLPLLGYLDLQGILELLPGLEVLDIEVKDSSIGSEQIQPLKHPRLKSLGIRGDRLKSISSG 1050
                              ||||.|                |..|.:|.|                
  Fly   581 ------------------ELLPPL----------------IATLGNPVL---------------- 595

  Fly  1051 TLAGLKSNDLSVQLRNTSLNALPPALL---------FPVPRSSHLSLNVEGSKITVLVPQFLNAL 1106
                     :|..|.|..::.|||.||         .|:|..|.:..|                 
  Fly   596 ---------ISTDLVNPVISPLPPPLLLATTTPPPPLPLPVESEVEKN----------------- 634

  Fly  1107 EDRRASLQLQGLASNPIVCDCNARALRRWLPSSGMPDVTCASPAYLLNRKLIEVGDDELTCDARR 1171
                     :...:||:             |::...:.|                    |..:..
  Fly   635 ---------ESTTANPV-------------PTNYTQETT--------------------TTTSTT 657

  Fly  1172 MTSSTSRPTASVP--HLLKTSSQLVTRSSSTTEEP----LIIWSLEPTQPP 1216
            .|::|:..::.|.  .::.|::...|.:|:||.:|    .:|..|:...||
  Fly   658 TTTTTTETSSQVAPIEIITTTAPTTTTTSTTTPKPNETLPVIVELQDPNPP 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7896NP_651754.1 LRR_8 109..172 CDD:290566
leucine-rich repeat 109..132 CDD:275380
LRR_RI <132..338 CDD:238064 10/38 (26%)
leucine-rich repeat 133..161 CDD:275380
LRR_8 160..220 CDD:290566
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
LRR_8 232..290 CDD:290566
leucine-rich repeat 234..257 CDD:275380
leucine-rich repeat 258..281 CDD:275380
LRR_RI 273..535 CDD:238064 67/244 (27%)
LRR_8 281..338 CDD:290566 10/38 (26%)
leucine-rich repeat 282..329 CDD:275380 6/20 (30%)
LRR_8 328..388 CDD:290566 17/69 (25%)
leucine-rich repeat 330..353 CDD:275380 5/31 (16%)
leucine-rich repeat 354..377 CDD:275380 7/23 (30%)
leucine-rich repeat 378..401 CDD:275380 7/22 (32%)
leucine-rich repeat 402..425 CDD:275380 4/22 (18%)
leucine-rich repeat 428..451 CDD:275380 9/22 (41%)
LRR_8 429..487 CDD:290566 21/59 (36%)
leucine-rich repeat 452..473 CDD:275380 6/22 (27%)
leucine-rich repeat 477..497 CDD:275378 6/25 (24%)
LRR_8 498..558 CDD:290566 12/59 (20%)
leucine-rich repeat 500..523 CDD:275380 7/22 (32%)
LRR_RI 502..769 CDD:238064 53/267 (20%)
leucine-rich repeat 524..547 CDD:275380 3/22 (14%)
leucine-rich repeat 548..571 CDD:275380 4/22 (18%)
LRR_8 572..630 CDD:290566 12/57 (21%)
leucine-rich repeat 572..595 CDD:275380 5/22 (23%)
leucine-rich repeat 596..619 CDD:275380 4/22 (18%)
LRR_8 619..678 CDD:290566 13/59 (22%)
leucine-rich repeat 620..643 CDD:275380 3/22 (14%)
leucine-rich repeat 644..667 CDD:275380 5/22 (23%)
LRR_8 666..726 CDD:290566 14/60 (23%)
leucine-rich repeat 668..691 CDD:275380 2/22 (9%)
leucine-rich repeat 692..715 CDD:275380 5/22 (23%)
LRR_8 714..774 CDD:290566 17/59 (29%)
leucine-rich repeat 716..739 CDD:275380 6/22 (27%)
leucine-rich repeat 740..761 CDD:275380 4/20 (20%)
leucine-rich repeat 764..789 CDD:275380 11/24 (46%)
leucine-rich repeat 790..810 CDD:275380 6/30 (20%)
leucine-rich repeat 818..850 CDD:275380 7/33 (21%)
leucine-rich repeat 863..883 CDD:275378 6/23 (26%)
LRR_RI <878..1070 CDD:238064 25/194 (13%)
LRR_8 884..944 CDD:290566 11/60 (18%)
LRR_4 884..925 CDD:289563 5/40 (13%)
leucine-rich repeat 884..907 CDD:275380 3/22 (14%)
leucine-rich repeat 908..933 CDD:275380 3/24 (13%)
leucine-rich repeat 934..955 CDD:275380 4/21 (19%)
leucine-rich repeat 958..982 CDD:275380 0/23 (0%)
leucine-rich repeat 983..1055 CDD:275380 9/71 (13%)
leucine-rich repeat 1009..1033 CDD:275380 3/23 (13%)
leucine-rich repeat 1058..1085 CDD:275380 10/35 (29%)
TPKR_C2 1121..1168 CDD:301599 5/46 (11%)
ltlNP_001261524.1 leucine-rich repeat 65..86 CDD:275380 4/20 (20%)
LRR_8 86..145 CDD:290566 17/58 (29%)
leucine-rich repeat 87..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..134 CDD:275380 7/22 (32%)
leucine-rich repeat 135..158 CDD:275380 4/22 (18%)
LRR_8 158..214 CDD:290566 21/63 (33%)
leucine-rich repeat 159..180 CDD:275380 9/22 (41%)
leucine-rich repeat 181..203 CDD:275380 6/21 (29%)
leucine-rich repeat 204..226 CDD:275380 9/31 (29%)
LRR_RI 226..451 CDD:238064 67/302 (22%)
leucine-rich repeat 227..249 CDD:275380 10/46 (22%)
leucine-rich repeat 250..272 CDD:275380 4/22 (18%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 4/18 (22%)
LRR_8 319..402 CDD:290566 23/107 (21%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 7/26 (27%)
leucine-rich repeat 367..391 CDD:275380 6/43 (14%)
LRR_8 369..426 CDD:290566 23/100 (23%)
leucine-rich repeat 392..415 CDD:275380 11/46 (24%)
leucine-rich repeat 416..439 CDD:275380 11/24 (46%)
LRR_8 438..>479 CDD:290566 8/40 (20%)
leucine-rich repeat 440..462 CDD:275380 4/21 (19%)
leucine-rich repeat 463..483 CDD:275380 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453786
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.