DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7896 and ltl

DIOPT Version :10

Sequence 1:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster
Sequence 2:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster


Alignment Length:961 Identity:196/961 - (20%)
Similarity:338/961 - (35%) Gaps:339/961 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 HLNLSSNMLQQLDYTHMQVVRSLES---------LDISRNTITTITPGTFREMGALKY-LDLSLN 362
            |:.||...|:..:    .||.||.:         |.|:.:.:..:...:|.:|....| |.:..|
  Fly    35 HVELSCEKLESFN----AVVDSLANKLNADTNIDLKITHSQLDDLEMRSFTDMNFNLYKLRMQWN 95

  Fly   363 SLRTIEDDALEGLDSLQTLIIKDNNILLVPGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGD 427
            ||:::.:....||.::..|.|.||::..:|..||..:|.|.:|.:...::.|:..|....:|.  
  Fly    96 SLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQR-- 158

  Fly   428 ITTLSLSRNVIRELPPGSFQMFSSLHTLDLSGNSLAVINAD--TFAGLESTLMALKLSQNRLTGL 490
            :|.|.|..|:|..|..|||.  .||..|.|..|.|..:|..  ....|||    |.::.|.:|.|
  Fly   159 VTNLILVSNIITRLDRGSFP--KSLLILHLGRNQLESLNGSLHDLHNLES----LFINANNITSL 217

  Fly   491 ------GGAPWVLPELRSLDLSGNTLTELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQ 549
                  ||      :||.|....|.|..||:            |::|.|             .|:
  Fly   218 DDELPDGG------QLRLLMAHNNRLERLPA------------NMAGMH-------------SLE 251

  Fly   550 VIDLSGCNIRQISGDLLAGLQDLKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAF 614
            .:.:. ||..:....:|....:|..:..::|:|:.|....|.:...:.::.:..|.|.|:.| :.
  Fly   252 TVHIH-CNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNS-SL 314

  Fly   615 VNVMKLQKLDLHGNQLSAFKGEYFNTGTGIEELDISDNQLSYLFPSSFRIHPR-LREIRAANNKF 678
            :.::||:..:...|.:..|.....:....::.|.:|.|::..|.|.     || ::|:...|   
  Fly   315 LPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPD-----PRGVQELMLVN--- 371

  Fly   679 SFFPAELISTLQYLEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQIL 743
                            :||.:|::.::... .|.|..||:|.:|.|:|:           .||:.
  Fly   372 ----------------LDLDNNRIDSLNGA-LAGLGNLRILNLAGNRLE-----------HLQVG 408

  Fly   744 DLAHNNLDRIGERTFEGLVRLEQLNLEGNRLSELSDGVFERTKLQMLENINLAHNR-------FE 801
            |             |:|::||:.|:|.||:|:||..  .|.|.|..|:.:.:|:|.       |:
  Fly   409 D-------------FDGMIRLDILDLTGNQLAELKP--LEMTLLPSLKILKVAYNNITKLEQDFK 458

  Fly   802 YAPL----NALQRQFFFVSSVDLSHNKIK--ELPGDDSIMVNIKRIDLSFNPLSSKAVHNVLNEP 860
            ..|:    |....|...:||..:::.:.|  .:||.       ..|.|..||:......|.|...
  Fly   459 GLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGK-------LEIHLDDNPIMCDVGLNELCRL 516

  Fly   861 KTVRELSLAGTG--IENLELLET--PFLQFLNLSHNKLKNVKPEVFQRVTLLETLDLSSNQLESL 921
            ..|:|..:.|..  .||.:.:.|  |.|..:||.               .::..|.|:..::.. 
  Fly   517 MAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLP---------------IMVTNLKLTGREVPK- 565

  Fly   922 EDLSMAWPQLQVL-QSLDVSNNSFEIVSQSNFGKLEMLRSLRLSHLPQCTRIEKNAFKQLPNLVS 985
                   |.::|: .||..:||                                           
  Fly   566 -------PMVRVIVPSLIKANN------------------------------------------- 580

  Fly   986 LEAYDLPLLGYLDLQGILELLPGLEVLDIEVKDSSIGSEQIQPLKHPRLKSLGIRGDRLKSISSG 1050
                              ||||.|                |..|.:|.|                
  Fly   581 ------------------ELLPPL----------------IATLGNPVL---------------- 595

  Fly  1051 TLAGLKSNDLSVQLRNTSLNALPPALL---------FPVPRSSHLSLNVEGSKITVLVPQFLNAL 1106
                     :|..|.|..::.|||.||         .|:|..|.:..|                 
  Fly   596 ---------ISTDLVNPVISPLPPPLLLATTTPPPPLPLPVESEVEKN----------------- 634

  Fly  1107 EDRRASLQLQGLASNPIVCDCNARALRRWLPSSGMPDVTCASPAYLLNRKLIEVGDDELTCDARR 1171
                     :...:||:             |::...:.|                    |..:..
  Fly   635 ---------ESTTANPV-------------PTNYTQETT--------------------TTTSTT 657

  Fly  1172 MTSSTSRPTASVP--HLLKTSSQLVTRSSSTTEEP----LIIWSLEPTQPP 1216
            .|::|:..::.|.  .::.|::...|.:|:||.:|    .:|..|:...||
  Fly   658 TTTTTTETSSQVAPIEIITTTAPTTTTTSTTTPKPNETLPVIVELQDPNPP 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7896NP_651754.1 PRK15370 20..>410 CDD:185268 29/111 (26%)
leucine-rich repeat 109..132 CDD:275380
leucine-rich repeat 133..161 CDD:275380
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..257 CDD:275380
PLN00113 237..>750 CDD:215061 107/460 (23%)
leucine-rich repeat 258..281 CDD:275380
leucine-rich repeat 282..329 CDD:275380 6/20 (30%)
leucine-rich repeat 330..353 CDD:275380 5/31 (16%)
leucine-rich repeat 354..377 CDD:275380 7/23 (30%)
leucine-rich repeat 378..401 CDD:275380 7/22 (32%)
leucine-rich repeat 402..425 CDD:275380 4/22 (18%)
leucine-rich repeat 428..451 CDD:275380 9/22 (41%)
leucine-rich repeat 452..473 CDD:275380 6/22 (27%)
leucine-rich repeat 477..497 CDD:275378 6/25 (24%)
leucine-rich repeat 500..523 CDD:275380 7/22 (32%)
leucine-rich repeat 524..547 CDD:275380 3/22 (14%)
leucine-rich repeat 548..571 CDD:275380 4/22 (18%)
leucine-rich repeat 572..595 CDD:275380 5/22 (23%)
leucine-rich repeat 596..619 CDD:275380 4/22 (18%)
leucine-rich repeat 620..643 CDD:275380 3/22 (14%)
leucine-rich repeat 644..667 CDD:275380 5/22 (23%)
leucine-rich repeat 668..691 CDD:275380 2/22 (9%)
LRR <684..1020 CDD:443914 69/353 (20%)
leucine-rich repeat 692..715 CDD:275380 5/22 (23%)
leucine-rich repeat 716..739 CDD:275380 6/22 (27%)
leucine-rich repeat 740..761 CDD:275380 4/20 (20%)
leucine-rich repeat 764..789 CDD:275380 11/24 (46%)
leucine-rich repeat 790..810 CDD:275380 6/30 (20%)
leucine-rich repeat 818..850 CDD:275380 7/33 (21%)
leucine-rich repeat 863..883 CDD:275378 6/23 (26%)
leucine-rich repeat 884..907 CDD:275380 3/22 (14%)
leucine-rich repeat 908..933 CDD:275380 3/24 (13%)
leucine-rich repeat 934..955 CDD:275380 4/21 (19%)
leucine-rich repeat 958..982 CDD:275380 0/23 (0%)
leucine-rich repeat 983..1055 CDD:275380 9/71 (13%)
leucine-rich repeat 1009..1033 CDD:275380 3/23 (13%)
leucine-rich repeat 1058..1085 CDD:275380 10/35 (29%)
LRRCT 1121..1168 CDD:214507 5/46 (11%)
ltlNP_729265.1 LRR 65..476 CDD:443914 120/502 (24%)
leucine-rich repeat 65..86 CDD:275380 4/20 (20%)
leucine-rich repeat 87..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..134 CDD:275380 7/22 (32%)
leucine-rich repeat 135..158 CDD:275380 4/22 (18%)
leucine-rich repeat 159..180 CDD:275380 9/22 (41%)
leucine-rich repeat 181..203 CDD:275380 6/21 (29%)
leucine-rich repeat 204..226 CDD:275380 9/31 (29%)
leucine-rich repeat 227..249 CDD:275380 10/46 (22%)
leucine-rich repeat 250..272 CDD:275380 4/22 (18%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 4/18 (22%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 7/26 (27%)
leucine-rich repeat 367..391 CDD:275380 6/43 (14%)
leucine-rich repeat 392..415 CDD:275380 11/46 (24%)
leucine-rich repeat 416..439 CDD:275380 11/24 (46%)
leucine-rich repeat 440..462 CDD:275380 4/21 (19%)
leucine-rich repeat 463..483 CDD:275380 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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