DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7896 and lrrn4

DIOPT Version :9

Sequence 1:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster
Sequence 2:NP_001120279.1 Gene:lrrn4 / 100145335 XenbaseID:XB-GENE-877010 Length:705 Species:Xenopus tropicalis


Alignment Length:934 Identity:180/934 - (19%)
Similarity:305/934 - (32%) Gaps:315/934 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 DLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGA-----PWVLP-ELRSLDLSGNTLTELP 514
            :..|.:|..:......|..:.....:|...|...|...     |..|| :..:||:|.|:||.:.
 Frog     9 ETKGTTLFHVTTQNVPGYSTEKPCKELHHGRNISLSSRSLSVFPQCLPSDTEALDMSNNSLTTIT 73

  Fly   515 STIFEELENVQSLNLSGNHLTPL-TGALFKPLDRLQVIDLSGCNIRQISGDLLAGLQDLKHIYLN 578
            .........:|.|:|..|.:..: .|:  ..|:.|:.:|||..|:..:  ...:.||.||.:.|.
 Frog    74 QPSLSRFSQLQWLDLKDNQIQDIYCGS--DVLENLEYLDLSSNNLSDV--PRCSKLQRLKWLSLA 134

  Fly   579 DNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQKLDLHGNQLSAFKGEYFNTG-- 641
            .|.:.::||.:|....::..::||...:|...||                .||.|.......|  
 Frog   135 RNPISQIQDFAFSYFPSLVFLNLSYTELGKSPSG----------------DLSVFSFALKVPGAP 183

  Fly   642 --TGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELISTLQYLEHIDLSHNQLKT 704
              :.||.||:|...||.:.|........|:|:                   ||.    |.:.:||
 Frog   184 VKSSIETLDLSSTFLSEVGPFWTSYLKNLKEL-------------------YLR----SMSNIKT 225

  Fly   705 IEE---LDFARLPRLRVLLVANNQ-LDMVSEMAFHNSTQLQILDLAHNNLDRIGERTFEGLVRLE 765
            :|:   |||   |||.:|..|::. |..:.:..|.|.:.|:.:||.:.||..:           .
 Frog   226 LEKILTLDF---PRLELLSCAHSSALASLDQSLFENGSHLKHVDLENCNLTAV-----------P 276

  Fly   766 QLNLEGNRLSELSDGVFERTKLQMLENINLAHNRFEYAPLNALQRQFFFVSSVDLSHNKIKELPG 830
            |.|:....||           |.:|.|           ||..                       
 Frog   277 QWNISSPHLS-----------LVLLGN-----------PLAC----------------------- 296

  Fly   831 DDSIMVNIKRIDLSFNPLSSKAVHNVL---NEPKTVRELSLAGTGIENLELLETPFLQFLNLSHN 892
                     |.|:::  |.|:.::..|   ||     .|...|.|:| :.|::            
 Frog   297 ---------RCDMTW--LVSEQINVTLIRANE-----TLCRQGDGLE-ISLVQ------------ 332

  Fly   893 KLKNVKPEVFQRVTLLETLDLSSNQLESLED--------LSMAWPQLQVLQSLDVSNNSFEIVSQ 949
                :..|..::.|...|::.:.....||.|        |.:..|.......||.:.     ::|
 Frog   333 ----LNGECQKKPTPYATVNNTPTAANSLNDSVVFTSTPLHLTPPHETSTVPLDKAT-----ITQ 388

  Fly   950 SNFGKLEMLRSLRLSHLPQCTRIEKN-----AFKQLPNLVSLEAYDLPLLGYLDLQGILELLPGL 1009
                                 ::|||     .|||..:......:..|.     .|....||.| 
 Frog   389 ---------------------KVEKNTGIITVFKQTSSDSFNGQHQNPA-----TQATTVLLEG- 426

  Fly  1010 EVLDIEVKDSSIGSEQIQPLKHPRLKSLGIRGDRLKSISSGTLAGLKSNDLSVQLRNTSLNALPP 1074
                ..|..:|.|                 :.:......|||..   |.|..:.||.:::|:|..
 Frog   427 ----TNVPTTSFG-----------------KSEAATKYFSGTSL---SKDSGLTLRTSTINSLVG 467

  Fly  1075 ALLFPVPRSSHLSLNVEGSKITVLVPQFLNAL-------EDRRASLQLQGLASNPIVCD---C-- 1127
            .:..|.|..|        .|..:.||..|..:       :|.:.:..|:. .|.|  ||   |  
 Frog   468 QITQPPPTVS--------KKPNISVPLELPEMHTGDYYYDDTQQTTTLKS-TSKP--CDYKPCRH 521

  Fly  1128 ---NARALRRWLPSSGMPDVTCASPAYLLNRKLIEVGDDELTCDARRMTSSTSRPTASVPHLLKT 1189
               ....|:|..|        |..|....|.   ...|..:...|..:|.::::.....|:....
 Frog   522 LQTECHELQRLTP--------CFCPGLTGNN---VPPDPPMMQGASEITDTSAQIHWCAPNSRVG 575

  Fly  1190 SSQLVTRSSSTTEEPLI-----------IWSLEPTQ-----PPSLKKMKTKAPLMKAQSPIISND 1238
            ..||:.|......:.::           :::|.|..     ..|.....:..||         ||
 Frog   576 KYQLIYRPEGDKNQTVVDNIYITSRKYTLYNLLPDTTYHICALSFNTAGSSQPL---------ND 631

  Fly  1239 DTLI-----------IGIVGGV-----VAFIAILIIIICIIRLRMSNAEYQQNATMIGIPAGMQM 1287
            |:..           :||:..:     ||.:||:::.:.:.:...:|...|.:..::        
 Frog   632 DSRFPCTEFRTKPSYVGILAALCTVAGVAMVAIIVLSVYLYKACRNNLINQYDTRLV-------- 688

  Fly  1288 GAHNAAYNYKNGAGAALYAVPPYH 1311
                   :|||.|......:|.|:
 Frog   689 -------SYKNPAFEYQLNIPSYN 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7896NP_651754.1 LRR_8 109..172 CDD:290566
leucine-rich repeat 109..132 CDD:275380
LRR_RI <132..338 CDD:238064
leucine-rich repeat 133..161 CDD:275380
LRR_8 160..220 CDD:290566
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
LRR_8 232..290 CDD:290566
leucine-rich repeat 234..257 CDD:275380
leucine-rich repeat 258..281 CDD:275380
LRR_RI 273..535 CDD:238064 19/84 (23%)
LRR_8 281..338 CDD:290566
leucine-rich repeat 282..329 CDD:275380
LRR_8 328..388 CDD:290566
leucine-rich repeat 330..353 CDD:275380
leucine-rich repeat 354..377 CDD:275380
leucine-rich repeat 378..401 CDD:275380
leucine-rich repeat 402..425 CDD:275380
leucine-rich repeat 428..451 CDD:275380
LRR_8 429..487 CDD:290566 4/30 (13%)
leucine-rich repeat 452..473 CDD:275380 2/16 (13%)
leucine-rich repeat 477..497 CDD:275378 4/24 (17%)
LRR_8 498..558 CDD:290566 17/61 (28%)
leucine-rich repeat 500..523 CDD:275380 6/22 (27%)
LRR_RI 502..769 CDD:238064 68/275 (25%)
leucine-rich repeat 524..547 CDD:275380 6/23 (26%)
leucine-rich repeat 548..571 CDD:275380 6/22 (27%)
LRR_8 572..630 CDD:290566 12/57 (21%)
leucine-rich repeat 572..595 CDD:275380 7/22 (32%)
leucine-rich repeat 596..619 CDD:275380 5/22 (23%)
LRR_8 619..678 CDD:290566 14/62 (23%)
leucine-rich repeat 620..643 CDD:275380 4/26 (15%)
leucine-rich repeat 644..667 CDD:275380 8/22 (36%)
LRR_8 666..726 CDD:290566 16/63 (25%)
leucine-rich repeat 668..691 CDD:275380 2/22 (9%)
leucine-rich repeat 692..715 CDD:275380 8/25 (32%)
LRR_8 714..774 CDD:290566 15/60 (25%)
leucine-rich repeat 716..739 CDD:275380 6/23 (26%)
leucine-rich repeat 740..761 CDD:275380 5/20 (25%)
leucine-rich repeat 764..789 CDD:275380 5/24 (21%)
leucine-rich repeat 790..810 CDD:275380 4/19 (21%)
leucine-rich repeat 818..850 CDD:275380 3/31 (10%)
leucine-rich repeat 863..883 CDD:275378 5/19 (26%)
LRR_RI <878..1070 CDD:238064 33/204 (16%)
LRR_8 884..944 CDD:290566 10/67 (15%)
LRR_4 884..925 CDD:289563 6/48 (13%)
leucine-rich repeat 884..907 CDD:275380 1/22 (5%)
leucine-rich repeat 908..933 CDD:275380 6/32 (19%)
leucine-rich repeat 934..955 CDD:275380 3/20 (15%)
leucine-rich repeat 958..982 CDD:275380 6/28 (21%)
leucine-rich repeat 983..1055 CDD:275380 11/71 (15%)
leucine-rich repeat 1009..1033 CDD:275380 3/23 (13%)
leucine-rich repeat 1058..1085 CDD:275380 7/26 (27%)
TPKR_C2 1121..1168 CDD:301599 11/54 (20%)
lrrn4NP_001120279.1 LRR_RI <33..164 CDD:238064 34/134 (25%)
leucine-rich repeat 39..58 CDD:275380 5/18 (28%)
leucine-rich repeat 59..82 CDD:275380 6/22 (27%)
LRR_8 62..116 CDD:290566 16/55 (29%)
leucine-rich repeat 83..105 CDD:275380 6/23 (26%)
LRR_8 105..162 CDD:290566 16/58 (28%)
leucine-rich repeat 106..127 CDD:275380 6/22 (27%)
leucine-rich repeat 128..151 CDD:275380 7/22 (32%)
AMN1 138..>297 CDD:187754 53/265 (20%)
leucine-rich repeat 152..187 CDD:275380 9/50 (18%)
leucine-rich repeat 188..211 CDD:275380 8/22 (36%)
leucine-rich repeat 212..239 CDD:275380 14/52 (27%)
leucine-rich repeat 240..261 CDD:275380 5/20 (25%)
FN3 547..642 CDD:238020 15/103 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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