Sequence 1: | NP_651753.2 | Gene: | Vps13B / 43550 | FlyBaseID: | FBgn0039727 | Length: | 3731 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001128358.1 | Gene: | Vps13b / 315036 | RGDID: | 1311183 | Length: | 3995 | Species: | Rattus norvegicus |
Alignment Length: | 4301 | Identity: | 996/4301 - (23%) |
---|---|---|---|
Similarity: | 1724/4301 - (40%) | Gaps: | 1044/4301 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 LESYITPILLSYVAKYVKNFRDEDAQVSLWEGEVTFQNLDLRLEVLEEELNLPVELVSGHIHELS 68
Fly 69 ILVPWTKLMSEPVKIVINTIEFVAKLPD----------SESKQRRASFQREQRRKSKRESVEQPD 123
Fly 124 QTKSPGPASSSSVVNKIINNINLQCHNIILKYVEDDIVVSMNVQTLNFSSAGEDWKPTMVDIHPV 188
Fly 189 SVVMRKLLQVSDLTICLDKRNTAGRIEVCQEPVLYRCTLECRVLRKYNANTVSTTSTTRIGVFTK 253
Fly 254 SLDINVSSLQFPMVMRLVKMLLEL--------KPAEFED---------------------DPQNP 289
Fly 290 ---EDQEAVAEGSESQQGTESAGRSVFWWAWSLLP---SFD--------TEAPSSSCDTPTGHAF 340
Fly 341 -----DLGVYAEELNFQLKNSEYFTDQSMGGIKRIRYTPILRISLGGLYYERTILKE----CDWA 396
Fly 397 NVKAGLSSMCMEP-LGAYRSDDLVDRNLVNTQEF-------QQERSFIDKSLFD----ENYMFAE 449
Fly 450 RSWCSYNYADYVARNTDEYMLFRSPVLAFD---VIEHRVPK-PSSH---PVAESQLRDLGVRIQY 507
Fly 508 R----LLSAGITFHFSQSFVQ--VKKVISDLIRPYD-YPGYRSESMKDEDRGVPEPENKNS-EMT 564
Fly 565 IPDLEYLMGLVP-TCNYKIELRNIVVQLYPRQQQDESSAINQHQLTTTVRQSL--LPYLQLKISL 626
Fly 627 VEGTMCGPVNPVRLVQLITHLEEKPRDVVNACYNCFHFNVKNLALMIMNTTPDNGRAKLLNIPRV 691
Fly 692 -----QVNWNRLLAPHLWRQNEAPLETSEI-KSEIITLEFSKRELIIAKRLVPLISSF-SGQDLC 749
Fly 750 DLAHIVANVNVNSDVIKLQSVGTKLNLVYHKYHTHLAAVGSLQGVHTDAVHTKM---------NI 805
Fly 806 RNVVLSTSKNADNKWLEMQCQFPLE--EVHS----EQEKIPGTVVCLWLEPFRITTDIYLLQFLN 864
Fly 865 FSDNSG-------------------------------RQITKDKEVETDL-ESVNQ--------- 888
Fly 889 SEPPITQSVSNYSTISASAIAFNDFQPRRISRNNSRKISVPEETV-HLSSE-RDERHTQAEPLTI 951
Fly 952 PVANKPQPSNFDTTDFVKRLTKMVVLVEIAQAKIDVCEVMMRK----TP---------------- 996
Fly 997 -GHTDVEYTSIR-LPHMKVKSG---NCEAIQRGNIRGVI--PVASNTELLNWVFDLNEFNV-CYR 1053
Fly 1054 RANVTEMIIAPVRTTITLALSFKTSDKV--DGSKGKEDKCANTCSINVHVDMSAINIFAQ--RVK 1114
Fly 1115 LLHEHCLIISKMY------GSLCPDE----------PAS--KWQTGKMKPRLEVYTGSAQNYPVI 1161
Fly 1162 KEFLELDPNFEAPKVKSAPKS--------------------SVILFCQWTIPRISFEMENSN-DF 1205
Fly 1206 KHSKIVM--SLEDLLLNIDKHSDFNKITTKIENFGLNYYEEK-HEEWE--KIDDLHI-------- 1257
Fly 1258 --KML-GDSTNLPLISVVITTVSLEDLYAKIGARNPHNKQHTISEVLIEVQP---IEMVLNLDQI 1316
Fly 1317 TEFMVPIC-EVLEIIGN-------SASAQSANKPSAPVPSKITTVQDLPMVHLNSKGIYVYLPLS 1373
Fly 1374 TGKKSCSV----------LLLRIESIQLTPSLENPLVRQLVRPDIYQKAAELNMLSTPGALVEDR 1428
Fly 1429 QYELSVRRVSLSTGNWKQTQEYR------IEKTLASKHDNPAFEWNNQSQSTELDHME------- 1480
Fly 1481 IFKDFDFIMIYAPAISY-----------DRFLVCGQSVEYNCATDFVASLNTHQISLISCIIVR- 1533
Fly 1534 -------------------------------------AQRLGCIIDQVCVKNAELPK---ARSHK 1558
Fly 1559 TLGNISKYNSVDNSIYFPADPKVFKKDTWIPKSSKKLVSERLS-YTNASTSFTDAKGSSDYFYGS 1622
Fly 1623 CQSDSGIHLGTRMKGYSRSLAAEEINRSGRQP---FV--------LSYPSSVSFVAGIFVLKIYD 1676
Fly 1677 VLELEELE---RP----------VMKP-----------LFL-MTVSQPSFMSTQNFKAAVTQASI 1716
Fly 1717 FNVNISVAKADV----DGKV--DSERFNESVFATLPGQLGS-SGIPPPLLTIKTQYDRLHQK--- 1771
Fly 1772 ----EVDVELRKPILLRICENTIKQL---ASDVFRIYTVLHET-------PCFNVRSPRPVPEGS 1822
Fly 1823 QLRQLKMNCYNADRFHLSCDRITAKFYDEERSYKCSF---VWLDVS---------TRIKFS---- 1871
Fly 1872 SRPQKAVIRSNI----GSFYVQSGEKM----LLHPLLMRLSVDLVSEPWSEELLVNATLKLNYLH 1928
Fly 1929 IDAGVFSILQLQKA-----------QQGVNRIREYADRE-------W-QQFLRSRPVL-----GT 1969
Fly 1970 PKDVSPCNLIKCTPSHESIERIKRPLKS----NAEFYQDDLRAGAFQFVYLNSESVLPMPYQVQI 2030
Fly 2031 I-----KKNYGIICWRYPQPRQMTSIHIYPVPMPVSRP-----------IHIRCRMEYFSETHET 2079
Fly 2080 FLHYCDFMLSETSTKQLTPPD--------RPICATIWRVVILQSLISVDGTCFEGSEDEDLSIEY 2136
Fly 2137 LQSDFKVDENNDFILHPKVLVGCMRIDTVFRAEKVPKLQLLLCCQDIELNFVNQTDNTGEL-PKQ 2200
Fly 2201 LNKYRLRQTPNITQTFLTVHVEDLQMHSRIYSRNDFSLQTEMRARVKC--LDYGFLNMLDVLEPM 2263
Fly 2264 KFSSYVRLTDY-PRSLVQANFLVDKLRLNCGPHVIHTLLSSKYHWQEVLQQK--DVRHVLMPKLV 2325
Fly 2326 IVNRIQTPISFGQTNTVEKIPVNPGEVQLYHFRSCSHVQELTFFITN------PKTLLVDSSDSV 2384
Fly 2385 HIALKFEDEEKIHNLRVGEYCITLKLAKLSTTQIYILVKGQIELVSMVPFNLVTEFREEEINYD- 2448
Fly 2449 ESTPPEHL--LLSKERSSYYQNVKRNADINMRLKLTAGLGRGRTGDIPLKTNNNLPW-------- 2503
Fly 2504 -------LVKVPTQSAQQFISIWVRILREDIKMDKPAEDFQPQKILICIWPIFEICNMLSCAVKA 2561
Fly 2562 TESTTGESSTIEAMGGRWALNTATTHATEHNIGFTFSGIL--RGSSKDEYSL---MLRTMDWHKF 2621
Fly 2622 FYYDP-----------------------TVWTIENALHKLGKSSKRKWPLNDPEELRVSRVLDFE 2663
Fly 2664 NAFDVKYQTKATREFSCCQGLDVTAWGMFINGTGLYVAIFMIQEQARLDLKANSLQMMPKLKSAF 2728
Fly 2729 TIDVRFDNG---WKSSTPICLEDFTQ---KSSSNAGRSLYLRYNSFVDIVIVERDEVLRL----- 2782
Fly 2783 ---ILEY---RQEDDGRRLFKLRSKFVFTNFTDVVL-----NALTLAMDHKENSTREEVEAYSIC 2836
Fly 2837 KKARSLVSSESTKNCSGNAMDVFYDLNAHKAKHNCDTAFVYFVCFSVGGSREISI---PIPLAVP 2898
Fly 2899 FTRRCFSLQA--------GPESIP-------------LMITLIEKDNVHYLNVFRDTAPAIVISN 2942
Fly 2943 NTNVKFIVAQT-SASENSNVSCTNSEFVGRNFEWNQLVLPHSNCYYTPPQMYANFPDVEFTMCNL 3006
Fly 3007 SLAVYKDKLCAKNKIAWSKPIRTDKSWQKFLHVPHHGDVKVVVCDKHRAIRLNIYYIAQQLEFSV 3071
Fly 3072 KDLRSRLTKPENVLMPSQEQAAPRPDESSEQENDTKRVTLPNMVTCAHFNEECESKTQTRIKIFI 3136
Fly 3137 KSFVFSLQTD------------NRENDFVKTEVC---------------NIYADDSMLIYDDDDD 3174
Fly 3175 QRELRLQLPNLQVDNQLYSSGKYDFPVLLC-AEKL--------------------YRRNC----- 3213
Fly 3214 ---SLPQVYDLDHVYKQQAQRTPVSLFTFIFYQDEMQLQNVRCQIPPFRVYIEDA---YLNQLLE 3272
Fly 3273 ALVECEPSNCVYSP--PVEQDQILLPAGMTLLPDQVVAQSLYISEPLRLNSFTVEPLNLLLSVHT 3335
Fly 3336 SSRLYIALDHSPLSFSRYERQQILTVPLRFGQSLGLHYLSGAIFGAGWVVGSLEILGSPSGLARS 3400
Fly 3401 FSTGLRDFVSMPVQGLFRGPWGFLVGVTQGSASLLRNVTAGTVNSVTKLAGSVARNLDRLTLDAE 3465
Fly 3466 HIELTEARRRARPQGFADGLTQGLTGLGISLLGAVGGLA-------HHTLEARSSV-----GVIA 3518
Fly 3519 GLTKGIVGALTKPISGAAEMLALTGQGVLHTVGFNAMP-QQVEPSFI-RNVALHGSSNRIWSYLP 3581
Fly 3582 EELSRDQM-LFFSEIMLQISTQLRPALLFLTSSVLAI--MQSDSEDLAFASPISKVDVLADREDP 3643
Fly 3644 SKLYLSLKSER 3654 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13B | NP_651753.2 | Chorein_N | 5..117 | CDD:289396 | 60/121 (50%) |
VPS13_C | 3319..3468 | CDD:293514 | 76/148 (51%) | ||
ATG_C | 3473..3546 | CDD:286423 | 39/84 (46%) | ||
Vps13b | NP_001128358.1 | Chorein_N | 3..94 | CDD:289396 | 55/90 (61%) |
SHR-BD | <2606..>2686 | CDD:284143 | 18/88 (20%) | ||
VPS13_C | 3559..3705 | CDD:293514 | 74/145 (51%) | ||
ATG_C | 3707..3811 | CDD:286423 | 45/103 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D51820at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.010 |