DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trp and Trpc3

DIOPT Version :9

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:XP_006232344.2 Gene:Trpc3 / 60395 RGDID:61973 Length:909 Species:Rattus norvegicus


Alignment Length:827 Identity:282/827 - (34%)
Similarity:446/827 - (53%) Gaps:118/827 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LSDVEKNFILSCERGDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILL--E 91
            |:..|:.|:.:.|.|::|.|:|:|||   :...|:||.|.|.::||..|:.||:.::..:||  |
  Rat    97 LTAEEERFLDAAEYGNIPVVRKMLEE---SRTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKE 158

  Fly    92 HNIEVGDALLHAISEEYVEAVEELLQWEETNH---------------KEGQPYSWEAVDRSKSTF 141
            :...:|||||.|||:.||..||.:|     .|               :|.:...:.|.|...:.|
  Rat   159 NLARIGDALLLAISKGYVRIVEAIL-----GHPGFAASRRLTLSPCEQELRDDDFYAYDEDGTRF 218

  Fly   142 TVDITPLILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALS 206
            :.||||:|||||.:.||::.:||.:||.:..|||..|.|.:|...|..|:..||:||||||:.|:
  Rat   219 SPDITPIILAAHCHKYEVVHLLLLKGARIERPHDYFCRCADCAEKQRLDAFSHSRSRINAYKGLA 283

  Fly   207 ASSLIALSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVML 271
            :.:.::|||.||||||.:||.||.:|..:|.||:.:|.::....:||...:||..|.|.|:|.:|
  Rat   284 SPAYLSLSSEDPVLTALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAIL 348

  Fly   272 NFNHEPSHDIWCLGQRQTLERLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQQLMD 336
            |.:.|....:...|.:.:|.|:||||:|:.|.||||||.||.|..|||:.|.|.|.:..:.:.:.
  Rat   349 NGDLESVEPLERHGHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAIKCLV 413

  Fly   337 VVKLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFL-MLLGAASLRVVQIT----F 396
            |:.:....|..::.|.:||.|...|.:|.||:||:.|:.|::.|| :|:..||.|...||    .
  Rat   414 VLVVALGLPFLAIGYWIAPCSRLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRFEGITTLPNI 478

  Fly   397 ELLAFPWML----TMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLWNI 457
            .::.:|..:    |....|           .|:.|:.:::.:::.|.|.|:.:|..|||:.|||:
  Rat   479 TVIDYPKQIFRVKTTQFTW-----------TEMLIMVWVLGMMWSECKELWLEGPREYIVQLWNV 532

  Fly   458 VDYISNMFYVTWILCRATAWV------------IVHRDLWFRGIDP---YF--PREHWHPFDPML 505
            :|:.....::.....|..|::            :...||....:.|   ||  .|:.|.|.||.:
  Rat   533 LDFGMLSIFIAAFTARFLAFLQATKAQQYVDSHVQESDLSEVTLPPEVQYFTYARDKWLPSDPQI 597

  Fly   506 LSEGAFAAGMVFSYLKLVHIFSINPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWY 570
            :|||.:|..:|.|:.::.:|...|...||||:||||.:.||.||..::.:|..||..|:..|..|
  Rat   598 ISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILYSY 662

  Fly   571 YAELEKNKCYHLHPDVADFDDQEKACTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKSFTR 635
            |...:.|..                      |:.:.|:.::|||:.|||.::.|..|.....|..
  Rat   663 YLGAKVNPA----------------------FTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIE 705

  Fly   636 FWALLMFGSYSVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPFNL 700
            ....:::|.|:|..::|||||||||:::|||.|.:.:|.|||||||:||:|||:||.|:||||:|
  Rat   706 NIGYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFSL 770

  Fly   701 CPNMK-----MLRKT-----------------LGRKRPSRTKSFMR-----------KSMERAQT 732
            .|:.|     ::|.|                 :|..: ||...|.:           .|:....|
  Rat   771 VPSPKSFVYFIMRITNFSKCRRRRLQKDLELGMGNSK-SRLNLFTQSNSRVFESHSFNSILNQPT 834

  Fly   733 LHDKVMKLLVRRYITAEQRRRDDYGITEDDIIEVRQDISSLRFELLE 779
            .:.::||.|::||:...|..:::..:.|.::.|::|||||||:||||
  Rat   835 RYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLE 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 278/822 (34%)
ANK 64..>168 CDD:238125 43/120 (36%)
ANK repeat 69..98 CDD:293786 9/30 (30%)
ANK repeat 99..135 CDD:293786 14/50 (28%)
ANK repeat 137..168 CDD:293786 14/30 (47%)
TRP_2 178..236 CDD:285535 28/57 (49%)
BASP1 938..1158 CDD:283191
Trpc3XP_006232344.2 trp 84..878 CDD:273311 278/822 (34%)
ANK repeat 134..165 CDD:293786 9/30 (30%)
ANK repeat 214..249 CDD:293786 16/34 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3609
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.770

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