DRSC/TRiP Functional Genomics Resources

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Protein Alignment trp and trpc2b

DIOPT Version :10

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:NP_001025337.2 Gene:trpc2b / 562120 ZFINID:ZDB-GENE-050712-3 Length:1139 Species:Danio rerio


Alignment Length:1089 Identity:303/1089 - (27%)
Similarity:489/1089 - (44%) Gaps:201/1089 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VEKNF-----ILSCER-GDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILL 90
            |.|.|     :|...| |:|..|..:|:...|..:...:..|...|.||..:|...|.|.|..||
Zfish    13 VNKKFRFPPELLGAIREGNLNMVSSLLKTGDGIIRQLDDSEDRQWREALNLSIRLGNEDTMASLL 77

  Fly    91 E----HNIEVGDALLHAISEEYVEAVEEL---LQWEETNHKEGQPYSWEAVDRS--KSTFTVDIT 146
            :    ...::.:|||.|:.......|:.|   |..|:.|..:.:.:|....|.|  .|.|...:|
Zfish    78 QGVKFDFRQIHEALLVAVDTNQPRVVKRLLDRLDQEKGNKMDVRSFSMAIFDHSIDDSQFAPGVT 142

  Fly   147 PLILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALSASSLI 211
            ||.||..::.|:|:.:|..:|..:|.||.:.|.|.||...:..|.|:.|.||||.||.:::.:.:
Zfish   143 PLTLACQKDLYDIVTMLNQKGHEIPWPHKISCACLECTNGRQYDLLKFSLSRINTYRGIASRAYL 207

  Fly   212 ALSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVMLNFNHE 276
            ::::.|.:|:||:||.:|::|...|.||:.:|..:.|:.|:|...||...|...|:..:||...:
Zfish   208 SITAEDAMLSAFRLSRDLRKLSKKEPEFKPQYLSLEQVCQEFAVELLGMCRNQSEVTTILNSCGD 272

  Fly   277 PSHDIWCLGQRQTLE-------RLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQQL 334
            ...|.......||.|       ||:||:.|.||.|||||..||:|::||...|.|:|..:.|.:|
Zfish   273 RDEDSEDELDHQTFEEGIPNLARLRLAVNYNQKQFVAHPICQQVLSSIWCGNLSGWRGSRTSWKL 337

  Fly   335 MDVVKLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLM-LLGAASLRVVQITFEL 398
            :....:..:.|...|.|.:||.|:..|.::.|.:||:.||.|||:||: |||           |.
Zfish   338 LVSFGIFLTMPFLCLIYWIAPKSKLGKILKIPVIKFLLHSASYMWFLITLLG-----------ES 391

  Fly   399 LAFPWMLTMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLWNIVDYISN 463
            :|   |....|.:...:...|.....:   .:::...:.|.|.::.:||..|.:|.||.:|.:..
Zfish   392 IA---MEVYRESFATRQHTILHNSFHM---VWVVGFFWFECKEVWIEGLRSYFLDWWNCLDVMVL 450

  Fly   464 MFYVTWILCRATAWVIVH-----RDLWFRGIDPYFP---REHWHPFDPMLLSEGAFAAGMVFSYL 520
            ..|:.....|....:.||     :|.....:  ||.   |:.||..||..:||..||...:.|:.
Zfish   451 SMYLASFALRLVIMLKVHFLCQLQDNQDECV--YFTETMRDQWHQEDPQFISEVLFAVTSMLSFT 513

  Fly   521 KLVHIFSINPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYYAELEKNKCYHLHPD 585
            :|.:|...:..||.||:|:|:||.|:::|.||..::..||.||:|.:   |..      |.:.|:
Zfish   514 RLAYILPAHESLGTLQISIGKMIDDMMRFMFILVIIGTAFLCGINNI---YVP------YIISPN 569

  Fly   586 VADFDDQEKACTIWRRFSNLFETSQSLFWASFGL-----VDLVSFDLAGIKSFTRFWALLMFGSY 645
            :                ..|.||...|||..||:     ||:.:|.||.:.      ..:::|.|
Zfish   570 L----------------GKLNETFSFLFWTMFGMADQTYVDMPAFALAELV------GRILYGIY 612

  Fly   646 SVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPFNLCPNMK----M 706
            ::|.:||||||||||::||:|.|.:.||.|||||||:|::|||.:|.|:|.|||:.|:.|    :
Zfish   613 TLIIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPVPFNIIPSPKAVFYL 677

  Fly   707 LRKTLGR---------KRPSRTKSFMRK----SMERAQTLHDKVMKLLVRRYITA-----EQRRR 753
            ||..:.|         ..|........|    |.|.......:|::.||:|||.:     |:.:|
Zfish   678 LRGIVKRICCCCFNCNSAPDYPPLTSMKDEGGSGENRIPYRQQVIRALVQRYIESARREFEETKR 742

  Fly   754 DDYGITEDDIIEVRQDISSLRFELLEIFTN---------------------------NNWDVPDI 791
            .|.|   :.|.|:.:.|..|..|:.:|.:|                           ||:...:.
Zfish   743 KDVG---NRITELSKVIGHLHTEMKQIHSNLFNYSGNTKADPSGDSSFLGKYILGAKNNFKDFNN 804

  Fly   792 EKKSQGVARTTK-------GKVMERRILKDFQIGFVENLKQEMSESESGRDIFSSLAKVIGRKKT 849
            |:::..:..|.:       .|..|            |..|:|.:..|.   |.::|         
Zfish   805 ERRAPPLQETVRHLEPAETNKEPE------------EERKEEQNAEEK---IDNTL--------- 845

  Fly   850 QKGDKDWNAIARKNTFASD-PIGSKRSSMQRHSQRSLRRKIIEQAN--------EGLQMN--QTQ 903
            |.|:.|.|.|..:...:.| ..|:....|:...:.:.....:|::|        ||.:.|  ||.
Zfish   846 QTGNDDANKIVIEIESSPDAESGNAADEMEETKEGTDLNGDVEESNGDVVEIISEGFKFNFGQTN 910

  Fly   904 LIEF-NPNLGDVTRATRVAYVKFMRKKMAADEVSLADDEGAPNGEGEKKPLDASGSKKSITSGGT 967
            |:.| :..:.:....|    ||...:::...|..::.|....|...|...:.:..:|..:..   
Zfish   911 LVSFLSKRIEEKLEKT----VKDNEEELDGGETDVSGDVEESNEASEDAEVVSEENKFELNQ--- 968

  Fly   968 GGGASMLAAAALRASVKNVDEKSGADGKP-----GTMGKPTDDKKAGDD 1011
               .||::..|     |..:||.|.:.|.     .|.|...::..|.:|
Zfish   969 ---TSMVSFLA-----KRFEEKLGGNFKENMEELNTGGTNNENNGASED 1009

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 251/801 (31%)
ANK repeat 69..98 CDD:293786 9/32 (28%)
ANK repeat 99..135 CDD:293786 10/38 (26%)
ANK repeat 137..168 CDD:293786 11/32 (34%)
TRP_CaM_bind1 797..860 CDD:467881 13/69 (19%)
PRK12323 <891..1102 CDD:481241 29/137 (21%)
PspC_subgroup_2 <1015..1156 CDD:468202
trpc2bNP_001025337.2 None
Blue background indicates that the domain is not in the aligned region.

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