DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trp and trpc2b

DIOPT Version :9

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:NP_001025337.1 Gene:trpc2b / 562120 ZFINID:ZDB-GENE-050712-3 Length:1140 Species:Danio rerio


Alignment Length:1062 Identity:298/1062 - (28%)
Similarity:486/1062 - (45%) Gaps:184/1062 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VEKNF-----ILSCER-GDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILL 90
            |.|.|     :|...| |:|..|..:|:...|..:...:..|...|.||..:|...|.|.|..||
Zfish    13 VNKKFRFPPELLGAIREGNLNLVSSLLKTGDGIIRQLDDSEDRQWREALNLSIRLGNEDTMASLL 77

  Fly    91 E----HNIEVGDALLHAISEEYVEAVEEL---LQWEETNHKEGQPYSWEAVDRS--KSTFTVDIT 146
            :    ...::.:|||.|:.......|:.|   |..|:.|..:.:.:|....|.|  .|.|...:|
Zfish    78 QGVKFDFRQIHEALLVAVDTNQPRVVKRLLDRLDQEKGNKMDVRSFSMAIFDHSIDDSQFAPGVT 142

  Fly   147 PLILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALSASSLI 211
            ||.||..::.|:|:.:|..:|..:|.||.:.|.|.||...:..|.|:.|.||||.||.:::.:.:
Zfish   143 PLTLACQKDLYDIVTMLNQKGHEIPWPHKISCACLECTNGRQYDLLKFSLSRINTYRGIASRAYL 207

  Fly   212 ALSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVMLNFNHE 276
            ::::.|.:|:||:||.:|::|...|.||:.:|..:.|:.|:|...||...|...|:..:||...:
Zfish   208 SITAEDAMLSAFRLSRDLRKLSKKEPEFKPQYLSLEQVCQEFAVELLGMCRNQSEVTTILNSCGD 272

  Fly   277 PSHDIWCLGQRQTLE-------RLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQQL 334
            ...|.......||.|       ||:||:.|.||.|||||..||:|::||...|.|:|..:.|.:|
Zfish   273 RDEDSEDELDHQTFEEGIPNLARLRLAVNYNQKQFVAHPICQQVLSSIWCGNLSGWRGSRTSWKL 337

  Fly   335 MDVVKLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLM-LLGAASLRVVQITFEL 398
            :....:..:.|...|.|.:||.|:..|.::.|.:||:.||.|||:||: |||           |.
Zfish   338 LVSFGIFLTMPFLCLIYWIAPKSKLGKILKIPVIKFLLHSASYMWFLITLLG-----------ES 391

  Fly   399 LAFPWMLTMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLWNIVDYISN 463
            :|   |....|.:...:...|.....:   .:::...:.|.|.::.:||..|.:|.||.:|.:..
Zfish   392 IA---MEVYRESFATRQHTILHNSFHM---VWVVGFFWFECKEVWIEGLRSYFLDWWNCLDVMVL 450

  Fly   464 MFYVTWILCRATAWVIVH-----RDLWFRGIDPYFP---REHWHPFDPMLLSEGAFAAGMVFSYL 520
            ..|:.....|....:.||     :|.....:  ||.   |:.||..||..:||..||...:.|:.
Zfish   451 SMYLASFALRLVIMLKVHFLCQLQDNQDECV--YFTETMRDQWHQEDPQFISEVLFAVTSMLSFT 513

  Fly   521 KLVHIFSINPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYYAELEKNKCYHLHPD 585
            :|.:|...:..||.||:|:|:||.|:::|.||..::..||.||:|.:   |..      |.:.|:
Zfish   514 RLAYILPAHESLGTLQISIGKMIDDMMRFMFILVIIGTAFLCGINNI---YVP------YIISPN 569

  Fly   586 VADFDDQEKACTIWRRFSNLFETSQSLFWASFGL-----VDLVSFDLAGIKSFTRFWALLMFGSY 645
            :                ..|.||...|||..||:     ||:.:|.||.:.      ..:::|.|
Zfish   570 L----------------GKLNETFSFLFWTMFGMADQTYVDMPAFALAELV------GRILYGIY 612

  Fly   646 SVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPFNLCPNMK----M 706
            ::|.:||||||||||::||:|.|.:.||.|||||||:|::|||.:|.|:|.|||:.|:.|    :
Zfish   613 TLIIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPVPFNIIPSPKAVFYL 677

  Fly   707 LRKTLGR---------KRPSRTKSFMRK----SMERAQTLHDKVMKLLVRRYITA-----EQRRR 753
            ||..:.|         ..|........|    |.|.......:|::.||:|||.:     |:.:|
Zfish   678 LRGIVKRICCCCFNCNSAPDYPPLTSMKDEGGSGENRIPYRQQVIRALVQRYIESARREFEETKR 742

  Fly   754 DDYGITEDDIIEVRQDISSLRFELLEIFTN---------------------------NNWDVPDI 791
            .|.|   :.|.|:.:.|..|..|:.:|.:|                           ||:...:.
Zfish   743 KDVG---NRITELSKVIGHLHTEMKQIHSNLFNYSGNTKADPSGDSSFLGKYILGAKNNFKDFNN 804

  Fly   792 EKKSQGVARTTKGKVMERRILKDFQIGFVENLKQEMSESESGRD-IFSSLAKVIGRKKTQKGDKD 855
            |:::..:..|.       |.|:..:..  |..::|..|.::..: |.::|         |.|:.|
Zfish   805 ERRAPPLQETV-------RHLEPAETN--EEPEEERKEEQNAEEQIDNTL---------QTGNDD 851

  Fly   856 WNAIARKNTFASD-PIGSKRSSMQRHSQRSLRRKIIEQAN--------EGLQMN--QTQLIEF-N 908
            .|.|..:...:.| ..|:....|::..:.:.....:|::|        ||.:.|  ||.|:.| :
Zfish   852 ANKIVIEIESSPDAESGNAADKMEKAKEGTDLNGDVEESNGDVVEIISEGFKFNFGQTNLVSFLS 916

  Fly   909 PNLGDVTRATRVAYVKFMRKKMAADEVSLADDEGAPNGEGEKKPLDASGSKKSITSGGTGGGASM 973
            ..:.:....|    ||...:::...|..::.|....|...|...:.:..:|..:..      .||
Zfish   917 KRIEEKLEKT----VKDNEEELDGGETDVSGDVEESNEASEDAEVVSEENKFELNQ------TSM 971

  Fly   974 LAAAALRASVKNVDEKSGADGK 995
            ::..|     |..:||.|.:.|
Zfish   972 VSFLA-----KRFEEKLGGNFK 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 251/801 (31%)
ANK 64..>168 CDD:238125 32/112 (29%)
ANK repeat 69..98 CDD:293786 9/32 (28%)
ANK repeat 99..135 CDD:293786 10/38 (26%)
ANK repeat 137..168 CDD:293786 11/32 (34%)
TRP_2 178..236 CDD:285535 21/57 (37%)
BASP1 938..1158 CDD:283191 12/58 (21%)
trpc2bNP_001025337.1 trp 23..762 CDD:273311 248/791 (31%)
ANK 26..159 CDD:238125 37/132 (28%)
ANK repeat 60..87 CDD:293786 8/26 (31%)
ANK repeat 89..134 CDD:293786 12/44 (27%)
ANK repeat 136..164 CDD:293786 9/27 (33%)
TRP_2 174..233 CDD:285535 21/58 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3609
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
54.770

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