DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trp and trpc5a

DIOPT Version :9

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:NP_001314676.1 Gene:trpc5a / 557456 ZFINID:ZDB-GENE-040812-1 Length:1041 Species:Danio rerio


Alignment Length:1031 Identity:392/1031 - (38%)
Similarity:568/1031 - (55%) Gaps:133/1031 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RLDYDLMMAEEYILSDVEKNFILSCERGDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIEN 80
            |:...::.| |..||..|:.|:.:.|:||..||:..|.|.:.....:.||.||:.||||:.||||
Zfish    20 RIPLQIVRA-EVELSPEERAFLSAVEKGDYAGVQHALREAEVYYNIDTNCVDPLGRSALLIAIEN 83

  Fly    81 ENFDLMVILLEHNIEVGDALLHAISEEYVEAVEELLQWEETNHKEGQPYSWEAVDRSKSTFTVDI 145
            ||.::|.:||:|.:..|||||:||.:|.|.|||.||...:.:.::..|..  .:|...|.||.||
Zfish    84 ENLEVMELLLDHGVNTGDALLYAIRKEVVGAVELLLSHRKPSGEKQVPSL--MMDAQFSEFTPDI 146

  Fly   146 TPLILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALSASSL 210
            ||::||||.|||||:|:|:.|..|:|.||.::|.|.|||:|...||||||:||:|.|:||::.||
Zfish   147 TPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCDCVECVSSSEVDSLRHSRSRLNIYKALASPSL 211

  Fly   211 IALSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVMLNFNH 275
            |||||.||:||||:|.||||.|..:|:|||.||.|:.|..:.|...|||.||:|.|||.:||...
Zfish   212 IALSSEDPILTAFRLGWELKELSKVENEFRQEYEELSQQCKLFAKDLLDQARSSRELETILNHRD 276

  Fly   276 EPSHDIWCLGQRQ--TLERLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQQLMDVV 338
            :.|.:   |..|:  .|.:|||||:|.||.|||.||.|||||.:||||.||:||:..:.:|:...
Zfish   277 DQSEE---LDPRECRDLAKLKLAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVMCF 338

  Fly   339 KLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLMLLGAASLRVVQITFELLAFPW 403
            .:|..||::||.|:|||.|....|::|||:|||.|:.||:.||.||..||..:.:...       
Zfish   339 IIGLLFPVFSLVYLLAPKSTLGLFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNL------- 396

  Fly   404 MLTMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLWNIVDYISNMFYVT 468
                      |.:|..|..:|..|:.:::..|:.|:|.::..|..||:.|.||::|:..|..|:.
Zfish   397 ----------HMQGPPPTVVEWMILPWVLGFIWAEIKEMWDGGFNEYVHDWWNLMDFAMNSLYLA 451

  Fly   469 WILCRATAWVIVHRDLWFRGIDPYFPREHWHPFDPMLLSEGAFAAGMVFSYLKLVHIFSINPHLG 533
            .|..:..|:|..:...         |||.|..:.|.|::|..||...:||.|:|:.:|:.|.|||
Zfish   452 TISLKIVAYVKYNSSR---------PREEWEMWHPTLIAEALFAIANIFSSLRLISLFTANSHLG 507

  Fly   534 PLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYY---AELEKNKCYHLHPDVADFDDQEKA 595
            |||:|||||::||:||.|||.|||.||..|||||.:||   |..|.|.|..:.     .:.|..|
Zfish   508 PLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYETEAADEPNHCKGIR-----CERQNNA 567

  Fly   596 CTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKSFTRFWALLMFGSYSVINIIVLLNMLIAM 660
                  ||.||||.|||||:.|||::|...::.....||.|....|||:|:||:::|||||||||
Zfish   568 ------FSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLIAM 626

  Fly   661 MSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPFNLCPNMK----MLRKTLGRKRPSRT-- 719
            |:||||:|::.||.||||||::||||||::|||:|||||:.|:.|    :.|...||...|.|  
Zfish   627 MNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFWYLCRWVHGRLCGSETAP 691

  Fly   720 -----------KSFMRKSMER-AQTLH-DKVMKLLVRRYITAEQR-RRDDYGITEDDIIEVRQDI 770
                       |.|..|..:| .|..| .:|::.||:||:.:..| .:...|:||::..|::|||
Zfish   692 PEEDTHKHENLKEFTEKHADRLIQNQHYQEVIRSLVKRYVASMIRSAKTSEGLTEENFKELKQDI 756

  Fly   771 SSLRFELLEIFTNNNWDVPDIEKKSQGVARTTKGKVMERRILKDFQ------IGFVENLKQEMSE 829
            ||.|:|:|::..|......:....|:...|.......|.|...|..      :.|......:.|.
Zfish   757 SSFRYEVLDLLGNRKPPRRNYSSSSEATLRDEVSDDGEARHHSDGSSIGAKGVSFKTITPSDPSY 821

  Fly   830 SESGRDIFSSLAKVIGRKKTQKGDKDWNAIARKNTFASDPIGS-------------KRSSMQRHS 881
            ..|.  :|.|::.:.....|::|....|.: |||...|..:.|             :|.|....|
Zfish   822 GVSA--LFHSISGMEAAGTTREGKPKINGL-RKNPSPSSSLSSVAPARAPALSRTWRRFSRFSSS 883

  Fly   882 QRSLRRKIIEQANEGLQMNQTQLIEFNPNLGDVTRATRVAYVKFMRKKMAADEVSLAD------- 939
            :::..|::      ||..::     ...:|...|..|...|             :::|       
Zfish   884 KKNSFRRL------GLLFSR-----MGSHLPQPTGVTAATY-------------TISDGLLHPPG 924

  Fly   940 ---DEGAPNGEGEKKPLDASGSK----KSITSGGTG-GGASM-LAAAALRASVKNV 986
               |.|...|:|   |:..|.:.    .::..||.| ||:.: ::....||:.::|
Zfish   925 AWHDLGFTRGDG---PVTRSETNLNQVATLNEGGIGIGGSGVGMSTNGQRANGRDV 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 346/784 (44%)
ANK 64..>168 CDD:238125 53/103 (51%)
ANK repeat 69..98 CDD:293786 14/28 (50%)
ANK repeat 99..135 CDD:293786 13/35 (37%)
ANK repeat 137..168 CDD:293786 19/30 (63%)
TRP_2 178..236 CDD:285535 37/57 (65%)
BASP1 938..1158 CDD:283191 15/65 (23%)
trpc5aNP_001314676.1 trp 20..762 CDD:273311 346/784 (44%)
ANK 38..165 CDD:238125 59/128 (46%)
ANK repeat 73..101 CDD:293786 14/27 (52%)
ANK repeat 102..139 CDD:293786 14/38 (37%)
TRP_2 179..238 CDD:285535 37/58 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581926
Domainoid 1 1.000 270 1.000 Domainoid score I1782
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 774 1.000 Inparanoid score I517
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D824310at2759
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 1 1.000 - - mtm6331
orthoMCL 1 0.900 - - OOG6_102173
Panther 1 1.100 - - O PTHR10117
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X802
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.900

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