DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trp and trp-2

DIOPT Version :10

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:NP_001022703.1 Gene:trp-2 / 192056 WormBaseID:WBGene00006615 Length:886 Species:Caenorhabditis elegans


Alignment Length:928 Identity:381/928 - (41%)
Similarity:529/928 - (57%) Gaps:128/928 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TESDAEKALGSRLDYDLMMAEEYILSDVEKNFILSCERGDLPGVKKILEEYQGTDKFNINCTDPM 69
            ||||     .|||.              ||.|:|||||||:..|:|:|... .|:.|||||.||:
 Worm    25 TESD-----NSRLR--------------EKQFLLSCERGDIGSVRKLLAGI-STETFNINCLDPL 69

  Fly    70 NRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYVEAVEELLQWEETNHK-EGQPYSWEA 133
            .|:||:.||||||.:::.:||:||||.|||:|:||.||.|||||.:::..|...| :.:....|.
 Worm    70 GRNALLIAIENENIEMIELLLDHNIETGDAILYAIGEENVEAVEIIVEHLEKMDKFDSERQGVEI 134

  Fly   134 VDRSKSTFTVDITPLILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSR 198
            .:.  |.||.||||::||||::|||.:|:.||:..|:|.||||:|.|.||..::..||||.|:||
 Worm   135 TEH--SAFTPDITPIVLAAHKDNYECIKLFLDKKGTVPHPHDVRCSCPECYVAREEDSLRLSRSR 197

  Fly   199 INAYRALSASSLIALSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHART 263
            |||||||::.|||.||:|||:|.||:||||||||..:|:|||.:|.|:.|..|.|...:||..|.
 Worm   198 INAYRALTSPSLICLSARDPILYAFELSWELKRLSFIENEFRTDYEELSQKCQKFCVHMLDQVRG 262

  Fly   264 SMELEVMLNFNHEPSHDIWC--LGQRQTLERLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFR 326
            |.||||:||......||:..  .|..:.|.||||||:..||.||||||.||||..|||:|:...|
 Worm   263 SKELEVVLNHTTNAWHDVTSANYGNPEKLARLKLAIQLSQKRFVAHPNCQQLLLDIWYEGVESVR 327

  Fly   327 RKQASQQLMDVVKLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLMLLGAASLRV 391
            ......:|:..:....|||::||.|:|||.|...:|.:|||:||::||.||:|||:||..||.|:
 Worm   328 CTNFIYKLIFYILGMLSFPLFSLVYLLAPHSSMGQFAKKPFIKFLSHSGSYIFFLILLIMASQRM 392

  Fly   392 VQITFELLAFPWMLTMLEDW-RKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLW 455
            ..|.        .:...:|. ||..||..|..||.||..:::.||:.|:|.|:..||:.|..:||
 Worm   393 NVID--------NILRTDDVDRKETRGPPPTIIECAIFLWVLGLIWVEIKQLWECGLYNYCRNLW 449

  Fly   456 NIVDYISNMFYVTWILCRATAWVIVHRDLWFRG----IDPYFPREHWHPFDPMLLSEGAFAAGMV 516
            ||:|:|:|..|:.....|..|:|.|.::. .|.    |..:.||..|..:||.||||..||...:
 Worm   450 NILDFITNSLYLCTTALRVVAYVQVEQEA-LRANSVHIARHLPRRDWDAWDPTLLSECFFATANI 513

  Fly   517 FSYLKLVHIFSINPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYYAELEKNKC-- 579
            ||.|||||||:::||||||::|||||:|||:|||.:|.||||||.|||||||||||.:.:|:|  
 Worm   514 FSSLKLVHIFTVSPHLGPLKISLGRMVIDIVKFFMVYALVLFAFACGLNQLLWYYASMRQNECNL 578

  Fly   580 YHLHPDVADF-----------DDQEKACTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKSF 633
            |..:.:....           ||:.|:|      |:::.|:::||||.||||||..|.|......
 Worm   579 YEQYKNEKSLSYKYEHLKESCDDKYKSC------SSIYHTAETLFWALFGLVDLTHFRLKEDHFL 637

  Fly   634 TRFWALLMFGSYSVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPF 698
            :.:....:||||...:|||||||||||||||||.||::||.|||||||:|::.||:|..|:||||
 Worm   638 SEWTGKTIFGSYCCCSIIVLLNMLIAMMSNSYQYISDQADIEWKFARSRLFLEYFDDTATLPPPF 702

  Fly   699 NLCPNMK-------MLRKTLGR----KRPSRTKSFMRKSMERAQTLHDKVMKLLVRRYITAEQRR 752
            |:.|:.|       .|.|.|..    ::||:.||...:|                 :.:...||.
 Worm   703 NIVPSPKSIYYCLHYLTKKLCNCTKLQQPSKQKSMRVES-----------------KNLAIRQRP 750

  Fly   753 RDDYGITEDDIIEVRQDISSLRFELLEIFTNNNWDVPDIEKKSQGVARTTKGKVMERRILKDF-- 815
            |.          ::.::.:..|:...:..:.|       :||:....|..|...:   :||:|  
 Worm   751 RK----------QLPENCAKNRYSGAQFHSRN-------KKKTAMAERRLKNSAL---LLKEFPV 795

  Fly   816 -----------QIGFVEN---LKQEMSESESGRDIFSSLAKVIGRKKTQKGDKDWNAIARKNTFA 866
                       .|..:::   ||.....|.|.....:...|.....|::..|.....:.|.:.. 
 Worm   796 PQMFKAGQRNMSISSIQSNGRLKPSFMPSSSKLSWSNLKVKASRLSKSKSIDTTHLDVTRLHAL- 859

  Fly   867 SDPIGSKRSSMQRHSQRS 884
                 ||:|.:|:.:..|
 Worm   860 -----SKKSPLQKQAHTS 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 354/791 (45%)
ANK repeat 69..98 CDD:293786 15/28 (54%)
ANK repeat 99..135 CDD:293786 14/36 (39%)
ANK repeat 137..168 CDD:293786 17/30 (57%)
TRP_CaM_bind1 797..860 CDD:467881 13/78 (17%)
PRK12323 <891..1102 CDD:481241
PspC_subgroup_2 <1015..1156 CDD:468202
trp-2NP_001022703.1 TRPV 34..757 CDD:454755 351/767 (46%)
ANK repeat 69..96 CDD:293786 14/26 (54%)
Blue background indicates that the domain is not in the aligned region.

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