DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trp and Trpc5

DIOPT Version :10

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:NP_543174.1 Gene:Trpc5 / 140933 RGDID:619787 Length:974 Species:Rattus norvegicus


Alignment Length:964 Identity:373/964 - (38%)
Similarity:541/964 - (56%) Gaps:125/964 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RLDYDLMMAEEYILSDVEKNFILSCERGDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIEN 80
            |:...::.||.. ||..||.|:.:.|:||...||:.|:|.:.....||||.||:.||||:.||||
  Rat    17 RIPLQIVRAETE-LSAEEKAFLSAVEKGDYATVKQALQEAEIYYNVNINCMDPLGRSALLIAIEN 80

  Fly    81 ENFDLMVILLEHNIEVGDALLHAISEEYVEAVEELLQWEETNHKEGQPYSWEAVDRSKSTFTVDI 145
            ||.::|.:||.|::.||||||:||.:|.|.|||.||.:.:.:.::..|..  .:|...|.||.||
  Rat    81 ENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRKPSGEKQVPTL--MMDTQFSEFTPDI 143

  Fly   146 TPLILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALSASSL 210
            ||::||||.|||||:|:|:.:..|:|.||.::|.|.|||:|...||||||:||:|.|:||::.||
  Rat   144 TPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSSSEVDSLRHSRSRLNIYKALASPSL 208

  Fly   211 IALSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVMLNFNH 275
            |||||.||:||||:|.||||.|..:|:||:|||.|:.|..:.|...|||.||:|.|||::||...
  Rat   209 IALSSEDPILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRD 273

  Fly   276 EPS--------HDIWCLGQRQTLERLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQ 332
            :.|        ||         |.:||:||:|.||.|||.||.|||||.:||||.||:|||....
  Rat   274 DHSEELDPQKYHD---------LAKLKVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVV 329

  Fly   333 QLMDVVKLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLMLLGAASLRVVQITFE 397
            :|:..:.:|..||:.|:.|:::|.|....|::|||:|||.|:.||:.||.:|..||..:|:... 
  Rat   330 KLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFICHTASYLTFLFMLLLASQHIVRTDL- 393

  Fly   398 LLAFPWMLTMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLWNIVDYIS 462
                            |.:|..|..:|..|:.:::..|:.|:|.::..|..|||.|.||::|:..
  Rat   394 ----------------HVQGPPPTVVEWMILPWVLGFIWGEIKEMWDGGFTEYIHDWWNLMDFAM 442

  Fly   463 NMFYVTWILCRATAWVIVHRDLWFRGIDPYFPREHWHPFDPMLLSEGAFAAGMVFSYLKLVHIFS 527
            |..|:..|..:..|:|..:...         |||.|..:.|.|::|..||...:.|.|:|:.:|:
  Rat   443 NSLYLATISLKIVAYVKYNGSR---------PREEWEMWHPTLIAEALFAISNILSSLRLISLFT 498

  Fly   528 INPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYY---AELEKNKCYHLHPDVADF 589
            .|.||||||:|||||::||:||.|||.|||.||..|||||.:||   |..|.|.|..:.     .
  Rat   499 ANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYETRAIDEPNNCKGIR-----C 558

  Fly   590 DDQEKACTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKSFTRFWALLMFGSYSVINIIVLL 654
            :.|..|      ||.||||.|||||:.|||::|...::.....||.|....|||:|:||:::|||
  Rat   559 EKQNNA------FSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLL 617

  Fly   655 NMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPFNLCPNMKML------------ 707
            |||||||:||||:|::.||.||||||::||||||::|||:|||||:.|:.|..            
  Rat   618 NMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFLYLGNWFNNTFC 682

  Fly   708 --RKTLGRKRPSRTKSFMRKSMER-AQTLH-DKVMKLLVRRYITAEQRR-RDDYGITEDDIIEVR 767
              |...||:|....:||..:..:. .|..| .:|::.||:||:.|..|. :.:.|:||::..|::
  Rat   683 PKRDPDGRRRRHNLRSFTERHADSLIQNQHYQEVIRNLVKRYVAAMIRNSKTNEGLTEENFKELK 747

  Fly   768 QDISSLRFELLEIFTNN------------NWDVPDIEKKSQGVARTTKGKVMERRILKDFQIGFV 820
            |||||.|:|:|::..|.            .:...|......|.||.....|       .|.:|..
  Rat   748 QDISSFRYEVLDLLGNRKHPRRSFSTSSAEFSQRDDTNDGSGGARAKSKSV-------SFNLGCK 805

  Fly   821 ENLKQEMSESESGRDIFSSLAKVIGRKKTQKGDKDWN-------------AIARKNTFASDPIGS 872
            :...|       |..:..::.:..|.:...|.:....             ..::.|...|:|...
  Rat   806 KKACQ-------GAPLIRTMPRASGAQGKPKAESSGKRSFMGPSFKKLGLLFSKFNGQTSEPTSE 863

  Fly   873 KRSSM-----QRHSQ-RSLRRKIIEQAN-EGLQMNQTQLIEFNPNLGDVTRATR 919
            ...::     |:||. :.:|...:|:.. |....::..|.|.  .||::..|.|
  Rat   864 PMYTISDGIAQQHSMWQDIRYSQMEKGKAEACSQSEMNLSEV--ELGEIRGAAR 915

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 344/787 (44%)
ANK repeat 69..98 CDD:293786 15/28 (54%)
ANK repeat 99..135 CDD:293786 13/35 (37%)
ANK repeat 137..168 CDD:293786 18/30 (60%)
TRP_CaM_bind1 797..860 CDD:467881 10/75 (13%)
PRK12323 <891..1102 CDD:481241 8/30 (27%)
PspC_subgroup_2 <1015..1156 CDD:468202
Trpc5NP_543174.1 trp 17..756 CDD:273311 344/787 (44%)
ANK repeat 69..98 CDD:293786 15/28 (54%)
Blue background indicates that the domain is not in the aligned region.

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