DRSC/TRiP Functional Genomics Resources

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Protein Alignment trp and trpc6b

DIOPT Version :9

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:XP_002665445.2 Gene:trpc6b / 102725535 ZFINID:ZDB-GENE-081030-19 Length:858 Species:Danio rerio


Alignment Length:862 Identity:297/862 - (34%)
Similarity:455/862 - (52%) Gaps:139/862 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LSDVEKNFILSCERGDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILL--E 91
            ||..|:.|:.:.|.|::|.::::|||   ..:.|:||.|.|.::||..|:.||:.::..:||  |
Zfish    63 LSPTEERFLEAAEYGNIPVIRRMLEE---LPELNVNCVDYMGQNALQLAVANEHLEVTELLLKKE 124

  Fly    92 HNIEVGDALLHAISEEYVEAVEELLQ---WEETNHKEGQPYSWE------AVDRSKSTFTVDITP 147
            :...:|||||.|||:.|:..||.:|.   :.:|......|...|      |.|...:.|:.||||
Zfish   125 NLARIGDALLLAISKGYIRIVEAILSHQAFADTTKLTSSPLQAETQDDFFAYDEDGTRFSHDITP 189

  Fly   148 LILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALSASSLIA 212
            :|||:|.:.|||:.|||.:||.:..|||..|.|:.|:..|..||..||:||||||:.|::.:.::
Zfish   190 IILASHCHEYEIVHILLRKGACIARPHDYFCKCNGCLYHQRHDSFSHSRSRINAYKGLASPAYLS 254

  Fly   213 LSSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVMLNFNHEP 277
            |||.||||||.:||.||..|..:|.||:.:|..:....:||...|||..|.:.|:|.:||.:.|.
Zfish   255 LSSEDPVLTALELSNELAVLANIEKEFKNDYKTLSMQCKDFVVGLLDLCRNTEEVEAILNGDTEA 319

  Fly   278 -SHDIWCLGQRQTLERLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQQLMDVVKLG 341
             .|  :..|.|..|.||||||:|:.|.||||||.||.|.:|||:.|.|.|::..:.:|:.|:.:.
Zfish   320 GGH--FDKGDRPNLVRLKLAIKYELKKFVAHPNCQQQLLSIWYENLSGLRQQTTAVKLLVVLGVV 382

  Fly   342 CSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLMLL---------GAASLRVVQI--- 394
            ...||.:|.|.:||.|:..|.:|.||:||:.|:.|:..||.||         |.:.|..:.|   
Zfish   383 VGLPILALLYWIAPSSKLGKIIRGPFLKFVAHAASFTIFLGLLIMNAADRFEGTSLLPNMTIHDH 447

  Fly   395 -----TFELLAFPWMLTMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDL 454
                 ..:...|.||                   |:.||::::.:|:.|.|.::|.|..||:::.
Zfish   448 PSQLFRMKTTPFTWM-------------------EMLIISWVVGMIWAECKEIWSLGPREYLLEP 493

  Fly   455 WNIVDYISNMFYVTWILCRATAWVIVHRDLWFRGIDPYF-----------------PREHWHPFD 502
            ||::|:.....:||..:.|..|:  .|.::....:|..:                 .|.||.|.|
Zfish   494 WNLLDFGMLAIFVTSFIARFMAF--YHANVAQNYVDKRYTDLSNITLPLEIEYYRLARVHWVPSD 556

  Fly   503 PMLLSEGAFAAGMVFSYLKLVHIFSINPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQL 567
            |.|:|||.:|..:|.|:.::.:|...|...||||:||||.:.||.||..|:.:|..||..|:..|
Zfish   557 PQLISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNL 621

  Fly   568 LWYYAELEKNKCYHLHPDVADFDDQEKACTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKS 632
            ..||...::|..                      |:.:.|:.::||||.|||.::.|..:.....
Zfish   622 YSYYRGAKQNGA----------------------FTTVEESFKTLFWAIFGLSEVKSVVINNGHK 664

  Fly   633 FTRFWALLMFGSYSVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPP 697
            |......:::|.|:|..:||||||||||::||:|.|.:.||.||||||::||.||||:|||:|.|
Zfish   665 FIENIGYVLYGVYNVTMVIVLLNMLIAMINNSFQEIEDDADVEWKFARAKLWFSYFEEGGTLPVP 729

  Fly   698 FNLCPN--------MKMLRKTL-------------------GRKRPSRTKSFMRKSMERAQTLHD 735
            |||.|:        |::.|..|                   |:::.|..|:....|.      :.
Zfish   730 FNLIPSPKSVISLAMRLKRLLLIPLHRHKEDLKEDTELNESGKQKESSEKNSPHTSR------YQ 788

  Fly   736 KVMKLLVRRYITAEQRRRDDYGITEDDIIEVRQDISSLRFELLEIFTNNNWDVPDIEKKSQGVAR 800
            ::||.|::||:...|..::...:.|.::.|::||||||||||||            ||..|....
Zfish   789 RIMKRLIKRYVIKAQTDKEGDEVNEGELKEIKQDISSLRFELLE------------EKSRQTEEL 841

  Fly   801 TTKGKVMERRILKDFQI 817
            ....:.:|.|::..::|
Zfish   842 AELVRRLEERLISQYKI 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 286/819 (35%)
ANK 64..>168 CDD:238125 44/114 (39%)
ANK repeat 69..98 CDD:293786 9/30 (30%)
ANK repeat 99..135 CDD:293786 14/44 (32%)
ANK repeat 137..168 CDD:293786 15/30 (50%)
TRP_2 178..236 CDD:285535 29/57 (51%)
BASP1 938..1158 CDD:283191
trpc6bXP_002665445.2 trp 50..829 CDD:273311 286/819 (35%)
ANK 73..206 CDD:238125 49/135 (36%)
ANK repeat 100..131 CDD:293786 9/30 (30%)
ANK repeat 179..210 CDD:293786 15/30 (50%)
TRP_2 220..279 CDD:285535 29/58 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
43.870

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