DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trp and trpc3

DIOPT Version :9

Sequence 1:NP_476768.1 Gene:trp / 43542 FlyBaseID:FBgn0003861 Length:1275 Species:Drosophila melanogaster
Sequence 2:NP_001276813.2 Gene:trpc3 / 101887082 ZFINID:ZDB-GENE-140129-1 Length:902 Species:Danio rerio


Alignment Length:826 Identity:287/826 - (34%)
Similarity:440/826 - (53%) Gaps:119/826 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LSDVEKNFILSCERGDLPGVKKILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILLEHN 93
            |:..|:.|:.:.|.|::|.|:|:|||   :...|:||.|.|.::.|..|:.||:.::..:||..:
Zfish    91 LTPEEERFLDAAEYGNIPVVRKMLEE---SLTLNVNCMDYMGQNGLQLAVGNEHLEVTELLLRRD 152

  Fly    94 --IEVGDALLHAISEEYVEAVEELLQWEETNHKEG--------QPYSWEAVDRSKSTFTVDITPL 148
              ..||||||.|||:.||..||.||......:.|.        |...:.:.|...:.|:.||||:
Zfish   153 NLARVGDALLLAISKGYVRIVEALLGHPSFGNGERLTRSPCELQDDDFYSYDEDGTRFSPDITPI 217

  Fly   149 ILAAHRNNYEILKILLDRGATLPMPHDVKCGCDECVTSQMTDSLRHSQSRINAYRALSASSLIAL 213
            |||||...||::.:||.:||.:..|||..|.|.:|...|..||..||:|||||||.|::.:.::|
Zfish   218 ILAAHCQKYEVVHMLLLKGARIERPHDYFCKCADCTEKQRKDSFSHSRSRINAYRGLASPAYLSL 282

  Fly   214 SSRDPVLTAFQLSWELKRLQAMESEFRAEYTEMRQMVQDFGTSLLDHARTSMELEVMLNFN---- 274
            ||.||||||.:||.||.:|..:|.||:.:|.::....:||...:||..|.:.|:|.:||.:    
Zfish   283 SSEDPVLTALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDTEEVEAILNGDVSAE 347

  Fly   275 -HEPSHDIWCLGQRQTLERLKLAIRYKQKTFVAHPNVQQLLAAIWYDGLPGFRRKQASQQLMDVV 338
             .|..|      .|..|.|:||||:|:.|.||||||.||.|..|||:.|.|.|.:..:.:.:.|:
Zfish   348 LEEGQH------HRSLLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTTAVKCLVVL 406

  Fly   339 KLGCSFPIYSLKYILAPDSEGAKFMRKPFVKFITHSCSYMFFLMLL---------GAASLRVVQI 394
            .:....|:.::.|..||.|:..|.:|.||:||:.|:.|::.||.||         |..:|..|.:
Zfish   407 VVALGLPLLAVGYWFAPCSKLGKILRSPFMKFVAHAASFIIFLCLLVFNASDRFEGITTLPNVTV 471

  Fly   395 TFELLAFPWMLTMLEDWRKHERGSLPGPIELAIITYIMALIFEELKSLYSDGLFEYIMDLWNIVD 459
            |...|....:.|....|           .|:.|:.::..:::.|.|.|:::|..||||.|||::|
Zfish   472 TDHPLQIFRVKTTQFSW-----------TEILIMVWVAGMMWSECKELWTEGPREYIMQLWNVLD 525

  Fly   460 YISNMFYVTWILCRATAWV-----------IVHR-DLWFRGIDP---YF--PREHWHPFDPMLLS 507
            :.....::.....|..|::           .:|. ||....:.|   ||  .|:.|.|.||.|:|
Zfish   526 FGMLSIFIAAFTARFFAFMQAMKAQKYVDEKIHAPDLSMVTLPPDVRYFTYARDKWLPSDPQLIS 590

  Fly   508 EGAFAAGMVFSYLKLVHIFSINPHLGPLQVSLGRMIIDIIKFFFIYTLVLFAFGCGLNQLLWYYA 572
            ||.:|..:|.|:.::.:|...|...||||:||||.:.||.||..::.:|..||..|:..|..||.
Zfish   591 EGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILYSYYL 655

  Fly   573 ELEKNKCYHLHPDVADFDDQEKACTIWRRFSNLFETSQSLFWASFGLVDLVSFDLAGIKSFTRFW 637
            ..:.|..                      |:.:.|:.::|||:.|||.::.|..|.....|....
Zfish   656 GAKVNPA----------------------FTTVEESFKTLFWSIFGLSEVSSVVLKYDHKFIENI 698

  Fly   638 ALLMFGSYSVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSQLWMSYFEDGGTIPPPFNLCP 702
            ..:::|.|:|..::|||||||||:::|||.|.:.||.|||||||:||:|||::|.|:||||::.|
Zfish   699 GYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDADVEWKFARSKLWLSYFDNGKTLPPPFSIVP 763

  Fly   703 NMK-----------MLRKTLGRKRPSR----------------TKSFMR-------KSMERAQTL 733
            :.|           :||  ..|:|..:                |:|.||       .|:....|.
Zfish   764 SPKSFYLCVKRLVNLLR--CRRRRLKKDVELGMDNSKSKLNLFTQSSMRMTDSHSFNSILNQPTR 826

  Fly   734 HDKVMKLLVRRYITAEQRRRDDYGITEDDIIEVRQDISSLRFELLE 779
            :.::||.|::||:...|..:::..:.|.::.|::|||||||:||||
Zfish   827 YQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLE 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trpNP_476768.1 trp 16..776 CDD:273311 283/821 (34%)
ANK 64..>168 CDD:238125 42/113 (37%)
ANK repeat 69..98 CDD:293786 8/30 (27%)
ANK repeat 99..135 CDD:293786 14/43 (33%)
ANK repeat 137..168 CDD:293786 14/30 (47%)
TRP_2 178..236 CDD:285535 30/57 (53%)
BASP1 938..1158 CDD:283191
trpc3NP_001276813.2 trp 78..869 CDD:273311 283/821 (34%)
ANK 101..233 CDD:238125 49/134 (37%)
ANK repeat 128..159 CDD:293786 8/30 (27%)
ANK repeat 206..241 CDD:293786 16/34 (47%)
TRP_2 247..306 CDD:285535 30/58 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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