DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS8 and Ip259

DIOPT Version :9

Sequence 1:NP_001247362.1 Gene:RpS8 / 43532 FlyBaseID:FBgn0039713 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_001260347.1 Gene:Ip259 / 34419 FlyBaseID:FBgn0025366 Length:259 Species:Drosophila melanogaster


Alignment Length:140 Identity:33/140 - (23%)
Similarity:53/140 - (37%) Gaps:36/140 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARK 75
            |:..|.:.....:|||.|       .:|...|..|.|      |||.::.:..|....:|.:..|
  Fly    11 RKLYGRRLDYEERKRKKE-------ARLPKDRARKAR------KLRGIKAKLFNKERRNEKIQIK 62

  Fly    76 TRIADVVYNASNNELVRTKTLVKNSIVVID-ATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVL 139
            .:|          :....|.:.|....|.| |.|       ||:|..|.:.:.|..     ::::
  Fly    63 KKI----------QAHEEKKVKKQEEKVEDGALP-------HYLLDRGIQSSAKVL-----SNMI 105

  Fly   140 TKKRSEKVMK 149
            .:||.||..|
  Fly   106 KQKRKEKAGK 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS8NP_001247362.1 PTZ00148 1..208 CDD:240292 33/140 (24%)
Ip259NP_001260347.1 NSA2 4..259 CDD:211393 33/140 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2007
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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