DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS8 and RGD1566369

DIOPT Version :9

Sequence 1:NP_001247362.1 Gene:RpS8 / 43532 FlyBaseID:FBgn0039713 Length:208 Species:Drosophila melanogaster
Sequence 2:XP_038952275.1 Gene:RGD1566369 / 291353 RGDID:1566369 Length:208 Species:Rattus norvegicus


Alignment Length:208 Identity:138/208 - (66%)
Similarity:166/208 - (79%) Gaps:2/208 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNF 65
            |||||::.||||.||||||...||||:||||||||||:|..|:|.||.||.|.|.|||||:.|||
  Rat     1 MGISRNNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPCRIHTVRVRGDNKKYRALRLDVGNF 65

  Fly    66 AWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHA 130
            .|.||....|||..||||||||||||||||.|||.:|:||:.|:|||||:||.||||||:..|..
  Rat    66 FWGSECCTCKTRTIDVVYNASNNELVRTKTPVKNCLVLIDSAPYRQWYESHYALPLGRKKGAKLT 130

  Fly   131 QKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGK 195
            .:|:|  :|.||||:|:.|||.||:|..|:...||:||..|::||||:||||||||:|||:||||
  Rat   131 PEEEE--ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK 193

  Fly   196 ELEFYLKKIKSKK 208
            ||||||:|||::|
  Rat   194 ELEFYLRKIKARK 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS8NP_001247362.1 PTZ00148 1..208 CDD:240292 137/206 (67%)
RGD1566369XP_038952275.1 PTZ00148 1..206 CDD:240292 137/206 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 275 1.000 Domainoid score I1682
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 302 1.000 Inparanoid score I2589
OMA 1 1.010 - - QHG53636
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001886
OrthoInspector 1 1.000 - - otm45141
orthoMCL 1 0.900 - - OOG6_100802
Panther 1 1.100 - - O PTHR10394
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1244
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.970

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