DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb22

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_444377.3 Gene:Pcdhb22 / 93893 MGIID:2136760 Length:794 Species:Mus musculus


Alignment Length:793 Identity:210/793 - (26%)
Similarity:327/793 - (41%) Gaps:151/793 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 FIYSGCVSLDGACINPE---YSASVPAGSLLGVLTVLPERIQAVDLDTINSPIRYSFASGMPGNY 325
            |:..|.|   ||...|.   .....|:|      |||.:.:|.:.|.......|  .|..:....
Mouse    16 FLLLGVV---GAGSEPRRYFVMEETPSG------TVLADLVQDLGLGVAELAAR--GAQVVSEEK 69

  Fly   326 ADYFQIDESTGVLKQTKAVDTSTAKKYDIIVKAEEVSPGPQRFTTAKLEIF-----VKPVDANPP 385
            ....|:|..||.|...:.:|     :.::....|......|......||||     |..::.:.|
Mouse    70 ESRLQLDLQTGKLILNEKLD-----REELCGSTEPCVTHFQVLLKKPLEIFQAELRVGDINDHSP 129

  Fly   386 VISSSQAEGYVDENSPIGTRVLDAHGNPISFMTTDADLSDSDPKPDYIYELTTPS-FNVT----G 445
            .....:....:.||||:||..|         :.|..|| |........|::.|.| |:|:    |
Mouse   130 EFPEREMAVKIIENSPVGTAFL---------LKTAQDL-DVGNNSVQNYKIGTNSHFHVSIRNRG 184

  Fly   446 DG----ILVVNEENLDRDPPAPGRFKFQVVARE----PRTNAASAPLSLTVHLRDVNDNAPKLAM 502
            ||    .||:::| |||:..|  .|:..:.|.:    |||..:    .:.:.:.|||||||:.|.
Mouse   185 DGRKYPELVLDKE-LDREVQA--AFRLTLTALDGGSPPRTGTS----QIRIVVLDVNDNAPEFAQ 242

  Fly   503 V-APISITAGDQSESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRTQGRL- 565
            . ..:.|.....|.| :|.:|:|.|.|.|.|..|:||::|.|....:.|.:||.:||:|....| 
Mouse   243 AFYRVQIPENSPSGS-MVAKVSAKDLDTGTNGEVSYSLFHSSQEMSKTFELNALSGEVRLIKTLD 306

  Fly   566 -LAGEQYSITVQATDIGGLSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTVVHAE 629
             .....|.:.::|||.||||.:..|.:.|....:..|...              |:|....:...
Mouse   307 FETTPSYELDIEATDGGGLSGKCSVSIQVVDVNDNYPELI--------------ISSLTNPIPEN 357

  Fly   630 DPENDAVVYSI---ISGNDLRQFAVGQESGV-------------IIVIRKLDRESLTRYQLILKA 678
            .||.:..::.|   .||.:.|.....|: ||             ::....||||....|.:.:..
Mouse   358 SPETEVALFRIRDRDSGENGRTICSIQD-GVPFTLEPSVENFYRLVTDGALDREIRAEYNITISV 421

  Fly   679 EDTG--GLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQA-SVGVVHATDADEGINAEI 740
            .|.|  .|::..|:.::|:||||..|.|  :.:.|...|.|..:.| .:|.:.|||:|.|.||.|
Mouse   422 TDLGIPKLTTQHTITVQVSDINDNAPAF--TQVSYTMLVHENNSPALHIGTISATDSDSGSNAHI 484

  Fly   741 TYS-IPTDIP-------FTINATSGEILTAKELDYEQLNEYKFVVTAKDGAPDARLGTASVTVMV 797
            ||| :|...|       .:|||.:|::...:.||||.|..::|.|:|.|....|....|.|.::|
Mouse   485 TYSLLPAQEPQLALNSLISINADNGQLFALRALDYEALQAFEFHVSATDRGSPALSSQALVRIVV 549

  Fly   798 LDLPDEVP------KFSDARIDVHIPE-NEENFLVATVQAFDPDSMPE--ITYVLRKGNAE-LFK 852
            ||..|..|      :.:.|.....:|. .|..:||..|.|.|.||...  :::.|.|.... ||.
Mouse   550 LDDNDNAPFVLYPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFS 614

  Fly   853 VSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTI----LLVVDVEDRNDLP-PRFITVP 912
            |...:|||||.:.|......:|:|.: .::::|..|....    :|:||...:..|| |.  .|.
Mouse   615 VWAHNGEVRTTRLLSERDVPKHRLLL-VVKDNGEPPRSASVTLQVLMVDGFSQPYLPLPE--VVR 676

  Fly   913 DPVTVNDDQGIGTIIATLPAIDG-----------------------------DGTSPGNVVRYEI 948
            ||.....|.....::..|.::..                             :|..||::|  ::
Mouse   677 DPSHQEGDVLTLYLVIALASVSSLFLLSVLLFVGVRLCRRAREVSLGGCSVPEGHFPGHLV--DV 739

  Fly   949 VGRGKAPKYFQVD 961
            .|.|...:.:|.:
Mouse   740 SGAGTLSQSYQYE 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637 22/110 (20%)
Cadherin_repeat 393..496 CDD:206637 34/115 (30%)
Cadherin_repeat 518..594 CDD:206637 28/77 (36%)
Cadherin_repeat 608..699 CDD:206637 23/108 (21%)
Cadherin_repeat 710..802 CDD:206637 37/100 (37%)
Cadherin_repeat 814..903 CDD:206637 27/96 (28%)
Cadherin_repeat 915..1005 CDD:206637 9/76 (12%)
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb22NP_444377.3 Cadherin_2 28..110 CDD:462413 18/94 (19%)
Cadherin_repeat 138..236 CDD:206637 34/114 (30%)
Cadherin_repeat 245..341 CDD:206637 32/96 (33%)
Cadherin_repeat 354..445 CDD:206637 22/91 (24%)
Cadherin_repeat 453..555 CDD:206637 37/101 (37%)
Cadherin_repeat 574..662 CDD:206637 25/88 (28%)
Cadherin_C_2 686..768 CDD:465139 8/69 (12%)
Blue background indicates that the domain is not in the aligned region.

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