DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb7

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_444362.3 Gene:Pcdhb7 / 93878 MGIID:2136741 Length:829 Species:Mus musculus


Alignment Length:814 Identity:206/814 - (25%)
Similarity:341/814 - (41%) Gaps:158/814 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 NYADYFQ-IDESTGVLKQTKAVDTSTAKKYDIIVKAEEVSPGPQRFTTAKLEIFVKPVDANP--- 384
            |.:..|| ...|.|::..|         ::|::.|.|:..|..|......:.:.|: |.:.|   
Mouse     9 NQSSAFQSFGNSKGLVAST---------QWDLMEKLEKAHPKRQVIAFIFMMVLVQ-VCSEPTTQ 63

  Fly   385 -PVISSSQAEGYV---DENSPIGTRVLDAHGNPISFMTTDADLSDSDPKPDYIYE-LTTPSFNVT 444
             .::..:::..:|   .::..:|.|.|.|....:        :||     ||... |..|.   |
Mouse    64 YSILEETESGSFVAHLAKDLGLGARELAARSARV--------VSD-----DYKQRLLLDPE---T 112

  Fly   445 GDGILVVNEENLDRDPPA----PGRFKFQVVAREPRTNAASAPLSLTVHLRDVNDNAPKL---AM 502
            ||.:|   .|.:||:...    |....|||...:|........|     ::|:||:||:.   .|
Mouse   113 GDLLL---REKVDREEVCSTVDPCVLHFQVTLEKPVQYFQGELL-----IQDINDHAPEFPEGEM 169

  Fly   503 VAPISITAGDQSESRLVTQVTATDNDEGPNAVVTYSI-----YHVSNNGIQKFTINATTG----E 558
            :  ::|....|..:.|...: |.|.|.|.|.:..|::     :||       .|.|.:.|    |
Mouse   170 L--LNIPENSQPGTLLPLNL-AQDLDVGSNGLQQYTVSPNSHFHV-------LTRNNSEGKKYPE 224

  Fly   559 IRTQGRLLAGE---QYSITVQATDIGG--LSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAE 618
            : .|.|.|..|   :.|:|:.|.|.|.  .|..|:|.:.:. ..|...|.|....|||||.|.:.
Mouse   225 L-VQDRALDREEQAELSLTLIALDGGSPPRSGTALVRILIM-DINDNAPEFVNSPYEVQVLESSL 287

  Fly   619 INSTVTVVHAEDPENDA-----VVYSIISGND--LRQFAVGQESGVIIVIRKLDRESLTRYQLIL 676
            .:|.|..|.|:|.  ||     |.|.....:|  .|.|::.:.:|.|.:.::||.|.:..|.:.:
Mouse   288 PDSPVLTVFAQDA--DAGNFGRVSYGFFQASDEIQRTFSINKVTGEIQLKKELDFEKIKFYHVKI 350

  Fly   677 KAEDTGGLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQASVGVVHATDADEGINAEIT 741
            :|.|.||||....|.::|.|:||..||...|:|  ...|.|...:..:.:....|.|.|.||::.
Mouse   351 EATDGGGLSGKGLVIVEVLDVNDNAPELTISSL--TSSVPENAPETIISIFRVGDRDSGENAKVV 413

  Fly   742 YSIPTDIPFTINATSGE---ILTAKELDYEQLNEYKFVVTAKD-GAPDARLGT-ASVTVMVLDLP 801
            .|||.::||.:.:|...   ::|...||.|...||...:...| |.|  ||.| .::||.|.|:.
Mouse   414 CSIPENLPFILKSTFKNFYTLVTESPLDRESRAEYNITIMVSDLGTP--RLTTWHTITVQVSDVN 476

  Fly   802 DEVPKFSDARIDVHIPENEENFL-VATVQAFDPD--SMPEITYVLRKGN------AELFKVSEKS 857
            |..|.|:.....:.:.||....| :.|:.|.|.|  |...|||.|...:      :.|..::..:
Mouse   477 DNAPAFTRTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLLPHDPELPLSSLISINADN 541

  Fly   858 GEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVP---------- 912
            |::..::.||||..:..:..:|..:...:......|:.|.|.|.||..| |:..|          
Mouse   542 GQLFALRALDYEVLQAFEFHVGATDRGSSALSSQALVRVVVLDDNDNAP-FVLYPMQNASAPCTE 605

  Fly   913 ------DPVTVNDDQGIGTIIATLPAIDGDGTSPGNV-VRYEIVGRGKAPKYFQVDPDTGAVRIR 970
                  :|         |.::..:.|:|.|  |..|. :.:::: :...|..|.|....|.||..
Mouse   606 LLPRAAEP---------GYLVTKVVAVDRD--SGQNAWLSFQLL-KATEPGLFSVWAHNGEVRTS 658

  Fly   971 DELRKEEDTEYQVDIRAYDLGEPQLSSVAPLRVDVHHLLSSGNN-------EIKLDNKLESGTGM 1028
            ..|.:.:..::::.:...|.|||..|:    .|.:|.||..|.:       |:..|...|     
Mouse   659 RLLSERDAPKHRLLMLVKDNGEPPRSA----SVTLHVLLVDGFSQPYLSLPEVAPDPTQE----- 714

  Fly  1029 SSESIGLAFSDDSYTTSVPESMEANSTLKLIQIV 1062
                     .:|:.|..:..::.:.|:|.|:.:|
Mouse   715 ---------VEDALTVYLVIALASVSSLFLLSVV 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637 13/59 (22%)
Cadherin_repeat 393..496 CDD:206637 26/110 (24%)
Cadherin_repeat 518..594 CDD:206637 25/89 (28%)
Cadherin_repeat 608..699 CDD:206637 33/97 (34%)
Cadherin_repeat 710..802 CDD:206637 29/96 (30%)
Cadherin_repeat 814..903 CDD:206637 23/97 (24%)
Cadherin_repeat 915..1005 CDD:206637 19/90 (21%)
Cadherin_repeat 1041..1144 CDD:206637 5/22 (23%)
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb7NP_444362.3 Cadherin_2 63..143 CDD:462413 22/98 (22%)
Cadherin_repeat 171..269 CDD:206637 28/107 (26%)
Cadherin_repeat 277..374 CDD:206637 34/98 (35%)
Cadherin_repeat 386..478 CDD:206637 29/93 (31%)
Cadherin_repeat 486..588 CDD:206637 24/101 (24%)
Cadherin_repeat 607..695 CDD:206637 23/103 (22%)
Cadherin_C_2 719..801 CDD:465139 5/21 (24%)
Blue background indicates that the domain is not in the aligned region.

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