DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb6

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_444361.1 Gene:Pcdhb6 / 93877 MGIID:2136740 Length:772 Species:Mus musculus


Alignment Length:618 Identity:172/618 - (27%)
Similarity:257/618 - (41%) Gaps:118/618 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 NPISFMTTDADLSD-SDPKPDY--------IYELTTPS--------------------------- 440
            ||:.|..|:..|:| :|..|::        |.|.|.|:                           
Mouse   112 NPVQFFQTELQLTDINDHSPEFPDTEMLLKIQESTQPATVFLLKAAQDSDIGSNAVQNYTVSPNL 176

  Fly   441 -FNVT----GDGIL---VVNEENLDRDPPAPGRFKFQVVAREPRTNAASAPLSLTVHLRDVNDNA 497
             |:|.    .||..   :|.:..|||:...  .....:.|.:......|...::.:.:.|:||||
Mouse   177 HFHVVTLSRSDGRKYPELVLDRALDREEQP--ELTLILTALDGGAPPKSGTTTVRIEVVDINDNA 239

  Fly   498 PKLAMVAPISITAGDQSE-SRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRT 561
            |:... :..|:...:.|. ..||..|:|.|.|.|.:..|.||::. ...|.|.|.|:..|||||.
Mouse   240 PEFVQ-SLYSVEVPENSPLDALVVTVSARDLDAGIHGNVAYSLFQ-GGGGPQPFVIDEITGEIRL 302

  Fly   562 QGRL--LAGEQYSITVQATDIGGLSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVT 624
            :|.|  .|...|::.:.|||.||||.:..|.:.|. ..|...|:.........:.|.|. .:.|.
Mouse   303 KGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVL-DVNDNAPKLTISSLTSSIPENAP-EAVVA 365

  Fly   625 VVHAEDP---ENDAVVYSIISGNDL---------RQFAVGQESGVIIVIRKLDRESLTRYQLILK 677
            |....||   :|..:|.||  .|:|         ..:.:..|.       .||||....|.:.:.
Mouse   366 VFSVSDPDSGDNGRMVCSI--QNELPFLLKPTFENYYTLAAEG-------PLDREIREEYNITII 421

  Fly   678 AEDTG--GLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQA-SVGVVHATDADEGINAE 739
            ..|.|  .|::..|:.::|.||||..|.|..::  |...|.|....| .:|.:.|||:|.|.||.
Mouse   422 VSDLGTPRLTTQHTITVQVVDINDNAPAFTQTS--YTMFVHENNNPALHIGTISATDSDSGSNAH 484

  Fly   740 ITYSI--PTDIPF------TINATSGEILTAKELDYEQLNEYKFVVTAKDGAPDARLGTASVTVM 796
            ||||:  |.|:..      :|||.:|::...:.:|||.|..::|.|.|:||...|....|.|.|:
Mouse   485 ITYSLLPPHDLQLSLASLVSINADNGQLFALRAMDYEALQAFEFHVVARDGGSPALSSQALVRVV 549

  Fly   797 VLDLPDEVP------KFSDARIDVHIPE-NEENFLVATVQAFDPDSMPE--ITYVLRKGNAE-LF 851
            |||..|..|      :.:.|.....:|. .|..:||..|.|.|.||...  :::.|.|.... ||
Mouse   550 VLDDNDNAPFILYPMQNASAPCTELLPRAAEPGYLVTKVVAVDSDSGQNAWLSFQLLKATEPGLF 614

  Fly   852 KVSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVPDPVT 916
            .|...:|||||.:.|......:|:|               :|||.|    |..|||..:|...|.
Mouse   615 SVWAHNGEVRTTRLLSERDVPKHRL---------------LLLVKD----NGEPPRSASVTLHVL 660

  Fly   917 VNDDQGIGTIIATLPAIDGDGTSPGNVVRYEIV 949
            :.|  |.......||.:..|.:...:::...:|
Mouse   661 LVD--GFSQPYLPLPEVQHDSSQDEDMLTLYLV 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637
Cadherin_repeat 393..496 CDD:206637 24/127 (19%)
Cadherin_repeat 518..594 CDD:206637 31/77 (40%)
Cadherin_repeat 608..699 CDD:206637 25/104 (24%)
Cadherin_repeat 710..802 CDD:206637 38/100 (38%)
Cadherin_repeat 814..903 CDD:206637 26/92 (28%)
Cadherin_repeat 915..1005 CDD:206637 7/35 (20%)
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb6NP_444361.1 Cadherin_2 30..112 CDD:462413 172/618 (28%)
Cadherin_repeat 140..238 CDD:206637 16/99 (16%)
Cadherin_repeat 247..342 CDD:206637 35/96 (36%)
Cadherin_repeat 354..446 CDD:206637 26/101 (26%)
Cadherin_repeat 454..556 CDD:206637 38/103 (37%)
Cadherin_repeat 575..663 CDD:206637 32/106 (30%)
Cadherin_C_2 685..768 CDD:465139 1/7 (14%)
Blue background indicates that the domain is not in the aligned region.

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