DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb2

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_444357.1 Gene:Pcdhb2 / 93873 MGIID:2136735 Length:799 Species:Mus musculus


Alignment Length:122 Identity:27/122 - (22%)
Similarity:44/122 - (36%) Gaps:45/122 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NIVRLKEVVVGNSLE----SIFL------VMEFCEQDLASLLDN----METP--------FSESQ 149
            |:..|.||:......    :.|:      .:..|:...::|.|.    .|.|        |||  
Mouse   244 NMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSE-- 306

  Fly   150 VKCIIIQLLKGLDYLHT-RYIIHRDLKVSNLLLTDTGCLKIADFGLARYLNNANKPM 205
                ||..:..:.:.|: |||:.||...:          |:.|      ||..|:|:
Mouse   307 ----IISSISDVKFSHSGRYIMTRDYLTA----------KVWD------LNMENRPV 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204 7/42 (17%)
Cadherin_repeat 146..259 CDD:206637 16/61 (26%)
Cadherin_repeat 280..383 CDD:206637
Cadherin_repeat 393..496 CDD:206637
Cadherin_repeat 518..594 CDD:206637
Cadherin_repeat 608..699 CDD:206637
Cadherin_repeat 710..802 CDD:206637
Cadherin_repeat 814..903 CDD:206637
Cadherin_repeat 915..1005 CDD:206637
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb2NP_444357.1 Cadherin_2 33..114 CDD:462413
Cadherin_repeat 139..240 CDD:206637
Cadherin_repeat 249..345 CDD:206637 25/117 (21%)
Cadherin_repeat 357..449 CDD:206637
Cadherin_repeat 457..559 CDD:206637
Cadherin_repeat 578..666 CDD:206637
Cadherin_C_2 689..771 CDD:465139
Blue background indicates that the domain is not in the aligned region.

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