DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb20

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001102865.1 Gene:Pcdhb20 / 680203 RGDID:1594228 Length:799 Species:Rattus norvegicus


Alignment Length:750 Identity:191/750 - (25%)
Similarity:314/750 - (41%) Gaps:139/750 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 ISSSQAEGY---VDENSPIGTRVL----DAHGNPISFMTTDADLSDSDPKPDYIYELTTPSFNVT 444
            :|.:.||..   |.|.:.||:.|.    |.........:.:|.:...|.|...:..|      :|
  Rat    23 LSRASAESLRYSVAEETEIGSFVANLARDLGLGVAELSSREARIVSDDNKKHLLLNL------LT 81

  Fly   445 GDGILVVNEENLDRD----PPAPGRFKFQVVAREP----RTNAASAPLSLTVHLRDVNDNAP--- 498
            ||.:|   .|.|||:    ...|....||||..:|    |..         :|:||:||:||   
  Rat    82 GDVLL---SERLDREELCGSTEPCVLPFQVVLEDPLQFYRAE---------LHVRDINDHAPTFL 134

  Fly   499 --KLAMVAPISITAGDQSESRLVTQVTATDNDEGPNAVVTYSI---------YHVSNNG------ 546
              ::.:..|.|...|   .:.|:.  .|.|.|.|.|::..|||         .|.|.:|      
  Rat   135 DKEITIKIPESAAIG---ATFLIE--NAQDLDIGSNSLQDYSISPSSHFYVKIHESGDGKIYPEL 194

  Fly   547 -IQKFTINATTGEIRTQGRLLAGEQYSITVQATDIGG--LSSQAIVEVSVTPGPNTKPPRFQKPI 608
             :.|...:....|:|            :|:.|.|.|.  .|...:|.:.|. ..|...|.|.:..
  Rat   195 VLDKALDHEEESELR------------LTLTALDGGSPPRSGTTLVLIKVL-DINDNAPEFAQNF 246

  Fly   609 YEVQVSEGAEINSTVTVVHAEDPE---NDAVVYSII-SGNDLRQ-FAVGQESGVIIVIRKLDRES 668
            |||||.|...|.|::..:.|:|.:   ...:.||.: :..|:|: |.:...||.:.:...||.|.
  Rat   247 YEVQVPEDTPIGSSIITISAKDLDMGNYGKISYSFLHATEDVRKTFEINPTSGEVNLRSLLDFEV 311

  Fly   669 LTRYQLILKAEDTGGLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQASVGVVHATDAD 733
            :..|.:.::|.|.||||:..|:::||.||||..||...|::...  :.|..::..:.:....|.|
  Rat   312 IQSYSVTIQATDGGGLSAKCTLSVKVLDINDNAPEVIISSVTKT--IPENASETLITLFSVRDQD 374

  Fly   734 EGINAEITYSIPTDIPFTINATSGE---ILTAKELDYEQLNEYKFVVTAKD-GAPDARLGTA-SV 793
            .|.|..|..|||.|:||.:..|...   :|:.|.||.|...||...:|..| |.|  ||.|. ::
  Rat   375 SGDNGRILCSIPDDLPFILKPTFKNFFTLLSEKALDRESRAEYNITITVSDLGTP--RLTTQHTI 437

  Fly   794 TVMVLDLPDEVPKFSDARIDVHIPENEENFL-VATVQAFDPD--SMPEITYVL------RKGNAE 849
            ||.|.|:.|..|.|:.....:.:.||....| :.|:.|.|.|  |...|||.|      :.....
  Rat   438 TVQVSDINDNAPAFTQTSYTMFVHENNSPALHIGTISATDSDSGSNAHITYSLMPPRDPQLALDS 502

  Fly   850 LFKVSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVP-- 912
            |..::..:|::..::.||||..:..:..:|..:..........|:.|.|.|.||..| |:..|  
  Rat   503 LISINADNGQLFALRALDYEVLQAFEFRVGATDRGSPALSSQALVRVVVLDDNDNAP-FVLYPLQ 566

  Fly   913 --------------DPVTVNDDQGIGTIIATLPAIDGDGTSPGNV-VRYEIVGRGKAPKYFQVDP 962
                          :|         |.::..:.|:|.|  |..|. :.:::: :...|..|.|..
  Rat   567 NASAPYTELLPRAAEP---------GYLVTKVVAVDRD--SGQNAWLSFQLL-KATEPGLFSVWA 619

  Fly   963 DTGAVRIRDELRKEEDTEYQVDIRAYDLGEPQLSSVAPLRVDVHHLLSSGNNEIKLDNKLESGTG 1027
            ..|.||....|.:.:..::::.:...|.|:|..|:    .|.:|.|:..|.::..|.        
  Rat   620 HNGEVRTSRLLSERDAPKHKLLLMVKDNGDPPRSA----SVMLHVLVVDGFSQPYLP-------- 672

  Fly  1028 MSSESIGLAFSDDSYTTSVPESMEANSTLKLIQIV 1062
            :...:...|..:|:.|..:..::.:.|:|.|:.::
  Rat   673 LPEVAHNPAHDEDTLTLYLVIALASVSSLFLLSVL 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637
Cadherin_repeat 393..496 CDD:206637 30/117 (26%)
Cadherin_repeat 518..594 CDD:206637 21/93 (23%)
Cadherin_repeat 608..699 CDD:206637 32/95 (34%)
Cadherin_repeat 710..802 CDD:206637 31/96 (32%)
Cadherin_repeat 814..903 CDD:206637 23/97 (24%)
Cadherin_repeat 915..1005 CDD:206637 18/90 (20%)
Cadherin_repeat 1041..1144 CDD:206637 4/21 (19%)
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb20NP_001102865.1 Cadherin_2 30..112 CDD:462413 23/90 (26%)
Cadherin_repeat 137..238 CDD:206637 26/118 (22%)
Cadherin_repeat 247..343 CDD:206637 33/95 (35%)
Cadherin_repeat 355..447 CDD:206637 31/95 (33%)
Cadherin_repeat 455..557 CDD:206637 24/101 (24%)
Cadherin_repeat 571..664 CDD:206637 21/108 (19%)
Cadherin_C_2 687..769 CDD:465139 4/20 (20%)
Blue background indicates that the domain is not in the aligned region.

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