DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb8

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001014779.1 Gene:Pcdhb8 / 680020 RGDID:1309895 Length:779 Species:Rattus norvegicus


Alignment Length:800 Identity:197/800 - (24%)
Similarity:331/800 - (41%) Gaps:169/800 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   433 IYELTTPSFNVTGDGILVVNEENLDRD--------PPAPGR-----------FKFQVVAREPRTN 478
            |.||:|....:..:|    |:|.|..|        ...|.|           ..||::...| ..
  Rat    56 IGELSTRGARIHHNG----NKELLQLDAKRGNLLLKEKPDREALCGATEPCVLHFQIILENP-VQ 115

  Fly   479 AASAPLSLTVHLRDVNDNAPKL---AMVAPI--SITAGDQSESRLVTQVTATDNDEGPNAVVTYS 538
            .....|.||    |:||::|:.   .|:..|  |:..|     .:.....|.|:|.|.|||..|:
  Rat   116 FFQTDLQLT----DINDHSPEFPDTEMLLKIQESVQPG-----TVFPLKAAQDSDIGSNAVQNYT 171

  Fly   539 I-----YHVSNNGIQKFTINATTG----EIRTQGRLLAGEQYSITVQATDIGG----LSSQAIVE 590
            :     :||       .|.:.|.|    |:.....|...||..:|:..|.:.|    .|....|.
  Rat   172 VNPNLHFHV-------LTHSHTDGRKYPELVLDRALDREEQPELTLILTALDGGAPPKSGTTTVR 229

  Fly   591 VSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTVVHAEDPE---NDAVVYSIISGN-DLRQFAV 651
            :.|. ..|...|:|.:.:|.|:|.|.:.:|:.|..|.|.|.:   :..|.||:..|: .|:.|.:
  Rat   230 IEVV-DINDNAPQFVQSLYAVEVPEDSPLNALVVTVSARDLDTGIHGNVAYSLFQGSGGLQPFVI 293

  Fly   652 GQESGVIIVIRKLDRESLTRYQLILKAEDTGGLSSSATVNIKVTDINDKNPEFEASTLPYVFQVE 716
            .:.||.|.:...||.|:...|.:.:.|.|:||||...||:|:|.|:||..|:...|:|  ...:.
  Rat   294 DEISGEIRLKGALDFEATPYYNMEIVATDSGGLSGKCTVSIQVVDVNDNAPKLTISSL--TRSIP 356

  Fly   717 EGKAQASVGVVHATDADEGINAEITYSIPTDIPFTINATSGE---ILTAKELDYEQLNEYKFVVT 778
            |...:|.|.|...:|.|.|.|..:..||..::||.:..|...   ::|...||.|...||...::
  Rat   357 ENAPEAVVAVFSVSDPDSGDNGRVLCSIQNELPFLLKPTFKNFYTLVTESPLDRESRAEYNITIS 421

  Fly   779 AKD-GAPDARLGTA-SVTVMVLDLPDEVPKFSDARIDVHIPENEENFL-VATVQAFDPDSMPE-- 838
            ..| |.|  ||.|. ::||.|.|:.|..|.|:.....:.:.||....| :.|:.|.|.||...  
  Rat   422 VSDLGTP--RLTTQHTITVQVSDINDNAPTFTQTSYTLFVHENNSPALHIGTISATDADSGSNGF 484

  Fly   839 ITYVL------RKGNAELFKVSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGP---GDTILL 894
            |.|.|      :.....|..::..:|::..::.||||:.:..:..:|.  .||..|   ...::.
  Rat   485 INYSLLPPHDQQLALVSLISINSDNGQLFALRALDYEAVQAFEFHVGA--TDGGSPALSSQALVR 547

  Fly   895 VVDVEDRNDLPPRFITVP----------------DPVTVNDDQGIGTIIATLPAIDGDGTSPGNV 943
            ||.::|.::.|  |:..|                :|         |.::..:.|:|.|  |..|.
  Rat   548 VVVLDDNDNAP--FVLYPLQNASAPCTELLPRAAEP---------GYLVTKVVAVDAD--SGQNA 599

  Fly   944 -VRYEIVGRGKAPKYFQVDPDTGAVRIRDELRKEEDTEYQVDIRAYDLGEPQLSSVAPLRVDVHH 1007
             :.:::: :...|..|.|....|.||....|.:.:..::::.:...|.|||..|:...|:|    
  Rat   600 WLSFQLL-KATEPGLFNVWAHNGEVRTARLLSERDVPKHRLLLVVKDNGEPPRSASIMLQV---- 659

  Fly  1008 LLSSGNNEIKLDNKLESGTGMSSESIGLAFSDDSYTTSVPESMEANSTLKLIQIV---------- 1062
            |:..|.::..|.        :...::.....:|..|..:..::.:.|:|.|:.::          
  Rat   660 LVVDGFSQPYLP--------LPEVALNPTKEEDMLTLYLVIALASVSSLFLLSVLLFVGVRLCRK 716

  Fly  1063 -NSKTSGDGPPAFRCEFVSGN-GGGIFNLSSADHGCNLLLIQPLDFENKSSYSLQLRL-----TS 1120
             .:.:.||      |....|: .|.:.::|||.     .|.|        :|..::.|     ||
  Rat   717 ARAASLGD------CSIPEGHFPGHLVDVSSAG-----TLSQ--------NYHYEVCLTEDSGTS 762

  Fly  1121 HRYFVNPLKDTTSVEIIVQD 1140
            ...|:||:..|:    ::||
  Rat   763 DFKFMNPIIPTS----LLQD 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637
Cadherin_repeat 393..496 CDD:206637 19/81 (23%)
Cadherin_repeat 518..594 CDD:206637 22/88 (25%)
Cadherin_repeat 608..699 CDD:206637 33/94 (35%)
Cadherin_repeat 710..802 CDD:206637 29/96 (30%)
Cadherin_repeat 814..903 CDD:206637 24/100 (24%)
Cadherin_repeat 915..1005 CDD:206637 20/90 (22%)
Cadherin_repeat 1041..1144 CDD:206637 23/116 (20%)
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb8NP_001014779.1 Cadherin_2 30..112 CDD:462413 13/59 (22%)
Cadherin_repeat 140..238 CDD:206637 27/110 (25%)
Cadherin_repeat 247..342 CDD:206637 34/94 (36%)
Cadherin_repeat 354..446 CDD:206637 29/93 (31%)
Cadherin_repeat 454..556 CDD:206637 24/103 (23%)
Cadherin_repeat 575..663 CDD:206637 22/103 (21%)
Cadherin_C_2 685..766 CDD:465139 18/99 (18%)
Blue background indicates that the domain is not in the aligned region.

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