DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb1

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001014800.1 Gene:Pcdhb1 / 364841 RGDID:1308760 Length:818 Species:Rattus norvegicus


Alignment Length:993 Identity:237/993 - (23%)
Similarity:364/993 - (36%) Gaps:298/993 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 SFIYSGCVSLDGAC-INPEYSASVPAGSL-----------LGVLTVLPERIQAVDLDTINSPIRY 315
            |.:...|||:.||. |....:..:.:||.           :|.|.....|:.|            
  Rat    16 SLLLLWCVSVGGAATIRYSVAEEMESGSFVANVAKDLGLEVGKLAERGARLVA------------ 68

  Fly   316 SFASGMPGNYADYFQIDESTGVLKQTKAVDTST--AKKYDIIVKAEEVSPGP-QRFTTAKLEIFV 377
                  .||.. :|::...||.|...:.:|...  .|....::..|.:...| |.|   ::|:.|
  Rat    69 ------EGNRL-HFRLHRKTGDLFVKEKLDREALCGKADPCVLHFEIILAEPLQSF---RVEVRV 123

  Fly   378 KPVDANPPVISSSQAEGYVDENSPIGTRV-------LDAHGNPISFMTTDADLSDSDPKPDYIYE 435
            ..::.|.||..:.:....:.|::|:|:|.       ||...|.:...|..|:.         .:.
  Rat   124 FDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANT---------YFH 179

  Fly   436 LTTPSFNVTGDGIL-VVNEENLDRDPPAPGRFKFQVVAREPRTNAASAPLSLTVHLR----DVND 495
            |.| .|...|.... :|.:..|||:  |.......:.|    .:..|.|.|.|.::|    ||||
  Rat   180 LHT-RFRSHGPKYAELVLDNPLDRE--AQPEVNLTITA----VDGGSPPKSGTANIRVVVLDVND 237

  Fly   496 NAPKLAMVAPISITAGDQSESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIR 560
            :.|:.:.:...:....:.....||..|||||.|||.|..:|||:.......::.|.::..|||:|
  Rat   238 HVPQFSRLVYRAQVPENSDNGSLVVVVTATDLDEGTNKQITYSLAENPEAVLRTFLVDPQTGEVR 302

  Fly   561 TQGRL--LAGEQYSITVQATDIGGLSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTV 623
            .:|.|  ...|.|.|.:||||.||||:.:.|.|.|. ..|..||       ||.:       |:|
  Rat   303 LRGPLDFETIETYDIDIQATDGGGLSAHSKVLVEVV-DVNDNPP-------EVTI-------SSV 352

  Fly   624 TVVHAED-PENDAVVYSIISGNDLR-------------QFAVG---QESGVIIVIRKLDRESLTR 671
            :...||| |....|....|...|:|             .|.|.   :.|..::..|.||||.::.
  Rat   353 SSPLAEDSPLQTVVALFTIRDRDVRVGGKITCFLKEDLPFVVKHTFRNSYSLVTDRILDREDVSN 417

  Fly   672 YQLILKAEDTG--GLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQA-SVGVVHATDAD 733
            |.:.|.|.|||  .||:...:.:.::||||.:|.|:..:  ||..|.|..:.| .:|.|||.|.|
  Rat   418 YNITLVAMDTGPPSLSTETVIEVVISDINDNSPVFQEDS--YVLTVRENNSPAVFIGKVHAEDLD 480

  Fly   734 EGINAEITYSIPTDIP-----------FTINATSGEILTAKELDYEQLNEYKFVVTAKDGAPDAR 787
            .|.||::|||:   :|           .:||:.:|::...:.:|||.:.:::|||.|.||...:.
  Rat   481 LGENAQVTYSL---LPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFLSL 542

  Fly   788 LGTASVTVMVLDLPDEVPKFSDARIDVHIPENEENFLVATVQAFDPDSMPEITYVLRKGNAELFK 852
            ....:|.|:|||                                |.|:.|.|.|.|:.|....  
  Rat   543 SSQVTVRVVVLD--------------------------------DNDNRPMILYPLQNGTLPC-- 573

  Fly   853 VSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVPDPVTV 917
                                                             |||.||          
  Rat   574 -------------------------------------------------NDLVPR---------- 579

  Fly   918 NDDQGIGTIIATLPAIDGDGTSPGNVVRYEIVGRGKAPK--YFQVDPDTGAVRIRDELRKEEDTE 980
              ....|.::..:.|:||| :...:.:.|.::   ||..  .|.|....|.:|...::.:.:...
  Rat   580 --SAEAGYLVTKVVAVDGD-SGQNSWLSYHLL---KATDLGLFSVQRQNGEIRTLRQISERDPMM 638

  Fly   981 YQVDIRAYDLGEPQLSSVAPLRVDVHHLLSSGNNEIKLDNKLESGTGMSSESIGLAFSDDSYTTS 1045
            .::.|...|.|:|.||:.|.|.:    ||..|.:|..|.                 |.|.|    
  Rat   639 QKLVILVQDHGQPALSTTASLNI----LLVDGFSEPYLQ-----------------FQDPS---- 678

  Fly  1046 VPESMEANSTLK------------------------LIQIVNSKTSGDGPPAF--RCEF----VS 1080
             ..|.:.|.|.|                        |.|.:..:........|  .|.|    |.
  Rat   679 -KHSRKVNPTTKYLVISLAVLSFLFLFSVTVIIIIHLYQKIKHREKFTVQEHFYDDCNFPNNLVQ 742

  Fly  1081 GNGGGIFNLSSADHGCNLLLIQPLDFENKSSY---SLQLRLTSHRYFVN-PLKDTTSVEIIVQDE 1141
            |.|.|             .|.||..::..|:.   :.:.|... |:..| |....|..   |:.|
  Rat   743 GRGNG-------------SLSQPCPYDMCSATGTGNSEFRFLK-RFMPNFPFPHATGE---VKTE 790

  Fly  1142 NDNA--PEFEFNRLRGQQ 1157
            ||.:  |:...||.||.:
  Rat   791 NDASLPPDSNRNRSRGSE 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637 20/116 (17%)
Cadherin_repeat 393..496 CDD:206637 27/114 (24%)
Cadherin_repeat 518..594 CDD:206637 34/77 (44%)
Cadherin_repeat 608..699 CDD:206637 30/109 (28%)
Cadherin_repeat 710..802 CDD:206637 35/103 (34%)
Cadherin_repeat 814..903 CDD:206637 7/88 (8%)
Cadherin_repeat 915..1005 CDD:206637 20/91 (22%)
Cadherin_repeat 1041..1144 CDD:206637 26/136 (19%)
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb1NP_001014800.1 Cadherin_2 30..110 CDD:462413 16/98 (16%)
Cadherin_repeat 140..238 CDD:206637 27/113 (24%)
Cadherin_repeat 246..343 CDD:206637 36/97 (37%)
CA 372..450 CDD:214520 22/77 (29%)
Cadherin_repeat 456..558 CDD:206637 36/138 (26%)
Cadherin_repeat 577..665 CDD:206637 24/107 (22%)
Cadherin_C_2 686..772 CDD:465139 16/98 (16%)
Blue background indicates that the domain is not in the aligned region.

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