DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad99C and stan

DIOPT Version :9

Sequence 1:NP_001189311.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster


Alignment Length:1340 Identity:325/1340 - (24%)
Similarity:506/1340 - (37%) Gaps:363/1340 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 DP-DTEIA---LNLVFPKGQPIFQLNGKKLQLLQPLDRDEENLSHIVFQVSCTTRS-TGKKRTIP 127
            || |:.:.   ::|:..:.|.:|:::.:...:......|.|.:....|:|..|..| ..:..|..
  Fly   385 DPEDSPVVYSMVSLLDSRSQSLFKVDSRTGVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTT 449

  Fly   128 IIVRVSDINDNAPRFMNTPYEVTVPESTPVGTTIFRNIQALDKDAGVNGLVEYFIAEGSPNSTNV 192
            :.|.|.|.||::|.|....:|.::.|...||:|:. .::|.|:|.|.|..:||.|          
  Fly   450 LQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVI-TLRATDQDIGKNAEIEYGI---------- 503

  Fly   193 EKYSADGYG--------TFAISFPHQGQVTVAKTLDFEKIQTYYLTIVASDRARNTADRLSSTTT 249
             :...||.|        .|.|. ...|.::...:||.|...:|:|.:.|:|.|...::|.::|.:
  Fly   504 -EAVTDGAGLAQDQEMPIFRID-SRSGVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATAS 566

  Fly   250 LTVNIADSNDLDPSFIYSGCVSLDGACINPEYSASVPAGSLLGVLTVLPERIQAVDLDT-INSPI 313
            :.|.:.|.||..|.|            ....|:..||.....|........|:|.|.|. .|:.|
  Fly   567 VQVKVLDDNDNYPQF------------SERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAAI 619

  Fly   314 RYSFASGMPGNYADYFQIDESTGVLKQTKAVDTSTAKKYDIIVKAEEVSPGPQRFTTAKLEIFVK 378
            ||:.   :.||....|.||..:|.:...|.:|..:.:.|.::::|:: ...|.|..|.:|.:.|.
  Fly   620 RYAI---IGGNTQSQFSIDSMSGDVSLVKPLDYESVRSYRLVIRAQD-GGSPSRSNTTQLLVNVI 680

  Fly   379 PVDANPPVISSSQAEGYVDENSPIGTRVLDAHGNPISFMTTDADLSDSDPKPDYIYELTTPSFNV 443
            ..:.|.|...:||.:..|.||.|:|..::                                    
  Fly   681 DANDNAPRFYTSQFQESVLENVPVGYNII------------------------------------ 709

  Fly   444 TGDGILVVNEENLDRDPPAPGRFKFQVVAREPRTNAASAPLSLTVHLRDVNDNAPKLAMVAPISI 508
                                                                             
  Fly   710 ----------------------------------------------------------------- 709

  Fly   509 TAGDQSESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRT--------QGRL 565
                        :|.|.|:|||.||.:||||....:|  ....::..||.::|        ||| 
  Fly   710 ------------RVQAYDSDEGANAEITYSISERDDN--FPLAVDPRTGWVQTIKPLDREEQGR- 759

  Fly   566 LAGEQYSITVQATDIGGL-----SSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTV 625
                 ::..|.|.| ||:     ||..::.|.   ..|...|.|....||..|.|.....:.||.
  Fly   760 -----FAFQVVAKD-GGVPPKSASSSVVITVQ---DVNDNDPAFNPKYYEANVGEDQPPGTPVTT 815

  Fly   626 VHAEDPENDA-VVYSIISGNDLRQFAVGQES--GVIIVIRKLDRESLTRYQLILKAEDTGGLSSS 687
            |.|.||:.|: :.|.|.:||...:||:..::  |:|.:.:.||.:...|:.|.:.|.|:||.|.:
  Fly   816 VTATDPDEDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDT 880

  Fly   688 ATVNIKVTDINDKNPEFEASTLPYVFQV-EEGKAQASVGVVHATDADEGINAEITYSIPTDI--- 748
            |||:|.:||.|:..|.||  ..||...| |:.....:|.||.|||:|.|:||:||||:..:.   
  Fly   881 ATVHINITDANNFAPIFE--NAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESING 943

  Fly   749 -----PFTINATSGEILTAKELDYEQLNEYKFVVTAKDGAPDARLGTASVTVMVLDLPDEVPKFS 808
                 ||:||..:|.|:|...||.|..:.|...||||||...:...|..|.:.|.|:.|..|.|.
  Fly   944 LGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFK 1008

  Fly   809 DARIDVHIPENEENFLVAT----VQAFDPD--SMPEITYVLRKGNAE--LFKVSEKSGEVRTIKG 865
            .......|.|:.   ||.|    |.|.|||  ....|.|:|...:.|  .|.:...||.:||.||
  Fly  1009 SPLYQASILEDA---LVGTSVIQVAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKG 1070

  Fly   866 LDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVPDPVT--VNDDQGIGTIIA 928
            ||.||.....||...::........|:.:.:.:||.||.||.|.:  |.:|  |.::..:|:::.
  Fly  1071 LDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFAS--DKITLYVPENSPVGSVVG 1133

  Fly   929 TLPAIDGD-GTSPGNVVRYEIVGRGKAPKYFQVDPDTGAVRIRDELRKEEDTE-----YQVDIRA 987
            .:.|.|.| |.:.  ||.|.|:| |.....|.:....|:.|.:.....|.|.|     :::.:||
  Fly  1134 EIHAHDPDEGVNA--VVHYSIIG-GDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRA 1195

  Fly   988 YDLGEPQLSSVAPLRVDVHHLLSSGNNEIKLDNKLESGTGMSSESIGLAFSDDSYTTSVPESMEA 1052
                     :..|||.|.|                          |.:..:|.:....|      
  Fly  1196 ---------ASPPLRNDAH--------------------------IEILVTDVNDNAPV------ 1219

  Fly  1053 NSTLKLIQIVNSKTSGDGP-------PAFRCE--------FVSGNGGGIFNLSSADHGCNLLLIQ 1102
               |:..|::.:......|       |||..:        .:|||...:..|:|:..|  |:|..
  Fly  1220 ---LRDFQVIFNNFRDHFPSGEIGRIPAFDADVSDKLHYRILSGNNANLLRLNSSSGG--LVLSP 1279

  Fly  1103 PLDF-----------------ENKSSYSLQLRLTSHRYFVNPLKDTTSVEIIVQDENDNA---PE 1147
            .|:.                 |.|:...|.:||.:.....|      ||.:.:.:..:.|   |.
  Fly  1280 QLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFN------SVTVRLNEMTEEAFLSPL 1338

  Fly  1148 FEFNRLRG--------QQDTFYTVVTEEMDVDTTILQV----RATDRDSGKFGTVRY-------- 1192
            ..| .|.|        ::..|...:.::.||.:.||.|    |..|....:|.|.:|        
  Fly  1339 LNF-FLDGLAAIIPCPKEHIFVFSIQDDTDVSSRILNVSFSARRPDVSHEEFYTPQYLQERVYLN 1402

  Fly  1193 -----------TLYDDDENRVNMPTSFFMMSEDTGVLRTAKHFKNENDFPLTFLVEARDSDGQEQ 1246
                       .|..||...|..|...|  .|...||:    |.|.::|        ..||    
  Fly  1403 RAILARLATVEVLPFDDNLCVREPCLNF--EECLTVLK----FGNASEF--------IHSD---- 1449

  Fly  1247 GSHRTRARIVVNKLADINRMALSFPNAAPSDLRNYYTELE 1286
                   .::...:..:|..|.|.|........:|..:.|
  Fly  1450 -------TVLFRPIYPVNTFACSCPEGFTGSKEHYLCDTE 1482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_001189311.1 Cadherin_repeat <68..138 CDD:206637 17/74 (23%)
Cadherin_repeat 146..259 CDD:206637 31/120 (26%)
Cadherin_repeat 280..383 CDD:206637 27/103 (26%)
Cadherin_repeat 393..496 CDD:206637 5/102 (5%)
Cadherin_repeat 518..594 CDD:206637 27/88 (31%)
Cadherin_repeat 608..699 CDD:206637 34/93 (37%)
Cadherin_repeat 710..802 CDD:206637 39/100 (39%)
Cadherin_repeat 814..903 CDD:206637 30/96 (31%)
Cadherin_repeat 915..1005 CDD:206637 24/97 (25%)
Cadherin_repeat 1041..1144 CDD:206637 24/134 (18%)
Cadherin_repeat 1159..1264 CDD:206637 25/127 (20%)
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 17/74 (23%)
Cadherin_repeat 468..577 CDD:206637 32/121 (26%)
Cadherin_repeat 585..685 CDD:206637 27/103 (26%)
Cadherin_repeat 693..790 CDD:206637 34/221 (15%)
Cadherin_repeat 799..891 CDD:206637 34/91 (37%)
Cadherin_repeat 901..1003 CDD:206637 39/101 (39%)
Cadherin_repeat 1012..1108 CDD:206637 30/98 (31%)
Cadherin_repeat 1118..1216 CDD:206637 28/135 (21%)
Cadherin_repeat 1235..1313 CDD:206637 17/79 (22%)
EGF_CA 1483..1518 CDD:238011 325/1340 (24%)
LamG 1558..1734 CDD:238058
EGF 1760..1789 CDD:278437
Laminin_G_2 1826..1944 CDD:280389
TNFRSF <1963..2061 CDD:304602
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:280888
GAIN 2293..2458 CDD:293098
GPS 2743..2802 CDD:295363
7tm_4 2809..3028 CDD:304433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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