DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb21

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001108076.1 Gene:Pcdhb21 / 307487 RGDID:1305349 Length:757 Species:Rattus norvegicus


Alignment Length:732 Identity:201/732 - (27%)
Similarity:316/732 - (43%) Gaps:120/732 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 VSLDGACINPE---YSAS--VPAGSLLGVLTVLPERIQAVDL-DTINSPIRYSFASGMPGNYADY 328
            |.|:|:.:..|   ||.:  ...||.:|.:      |:.:|: |......|..|     .:|..|
  Rat    19 VFLEGSLVLSETWSYSVAEETETGSSIGNI------IKDMDVGDLAARGARVIF-----DDYQPY 72

  Fly   329 FQIDESTGVLKQTKAVD----TSTAKKYDIIVKAEEVSPGPQRFTTAKLEIFVKPVDANPPVISS 389
            .:::..||.|...|.:|    .||::  ..|:..:.:...|.:|..|  |:.::.::.:.|....
  Rat    73 LRLELETGNLLLNKKLDREALCSTSE--PCILHFQVLLENPLQFFQA--ELLIEDINDHTPTFLE 133

  Fly   390 SQAEGYVDENSPIGTRVLDAHGNPISFMTTDA-DLS---------DSDPKPDYIYELTTPSFNVT 444
            ......:.|.:..||          :|...:| ||.         ...|.|.:..:|..     :
  Rat   134 KLIFLNISEGATPGT----------AFQMDNAQDLDIGMNGILNYSISPNPYFYLKLKD-----S 183

  Fly   445 GDGIL---VVNEENLDRDPPAPGRFKFQVVARE----PRTNAASAPLSLTVHLRDVNDNAPKLAM 502
            |.|..   :|...:|||:..|  .....::|.:    |||.|    :.:.|.:.|||||||:...
  Rat   184 GKGRRYPELVLARSLDREKEA--SISLILIAIDGGSLPRTGA----VQVQVVVLDVNDNAPEFEK 242

  Fly   503 VAPISITAGDQSESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRTQGRLLA 567
            .........:.|...||.:|:|.|.|.|.|..|:||..|:|.:..:.|.|:..:|||..: .:|.
  Rat   243 TLYEVQVPENSSVDSLVIKVSAKDLDSGINGEVSYSFSHISRDVQKTFEIHPISGEIHLK-TVLD 306

  Fly   568 GE---QYSITVQATDIGGLSSQAIVEVSVTPGPNTKPPR-----FQKPIYEVQVSEGAEINSTVT 624
            .|   .|:|.|||.|.||||.::.:.|.|| ..|..||.     ...||.|..:||     ..|.
  Rat   307 FEVIPSYTINVQAIDGGGLSGKSAIIVQVT-DVNDNPPEIVITSLMSPIQENSLSE-----MVVA 365

  Fly   625 VVHAEDP---ENDAVVYSIISGNDLRQFAVG---QESGVIIVIRKLDRESLTRYQLILKAEDTG- 682
            :....|.   ||..::.||   .|...|.:.   :....::....|||||...|.:.:...|.| 
  Rat   366 IFSLRDQDSGENGRMICSI---QDKLPFLLKPTFKNFYTLVTEHPLDRESRAEYNITITVSDLGT 427

  Fly   683 -GLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQASVGVVHATDADEGINAEITYSIPT 746
             .|::..|:.::|.||||..|.| ..|...:|..|..:....:|.:.|||:|.|.||.||||:  
  Rat   428 PRLTTQHTITVQVADINDNAPAF-TQTSYTIFVQENNRPALHIGTITATDSDSGSNAHITYSL-- 489

  Fly   747 DIPF-----------TINATSGEILTAKELDYEQLNEYKFVVTAKDGAPDARLGTASVTVMVLDL 800
             :||           ::||.:|::...:.||||.|...:|.|.|.||...|....|.|.|||||.
  Rat   490 -LPFHDPQLSLASLISVNADNGQLFALRALDYETLQTLEFHVGATDGGSPALSSQALVRVMVLDD 553

  Fly   801 PDEVP------KFSDARIDVHIPE-NEENFLVATVQAFDPDSMPE--ITYVLRKGNAE-LFKVSE 855
            .|..|      :.:.|.....:|. .|..:||..|.|.|.||...  :::.|.|.... ||.:..
  Rat   554 NDNAPFILYPLQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSIWA 618

  Fly   856 KSGEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTI----LLVVDVEDRNDLPPRFITVPDPVT 916
            .:|||||.:.|......:|:|.: .::::|..|....    |||||...:..||...:.: ||..
  Rat   619 HNGEVRTTRMLSEHDVPKHKLLL-LVKDNGEPPRSASVTLHLLVVDGFSQPYLPLPEVAL-DPTN 681

  Fly   917 VNDDQGIGTIIATLPAI 933
            |:::....:::..|.::
  Rat   682 VDEEALTLSLVIALASV 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637 25/112 (22%)
Cadherin_repeat 393..496 CDD:206637 26/119 (22%)
Cadherin_repeat 518..594 CDD:206637 31/78 (40%)
Cadherin_repeat 608..699 CDD:206637 25/98 (26%)
Cadherin_repeat 710..802 CDD:206637 37/102 (36%)
Cadherin_repeat 814..903 CDD:206637 28/96 (29%)
Cadherin_repeat 915..1005 CDD:206637 2/19 (11%)
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb21NP_001108076.1 Cadherin_2 30..110 CDD:462413 20/92 (22%)
Cadherin_repeat 136..236 CDD:206637 26/120 (22%)
Cadherin_repeat 245..341 CDD:206637 35/97 (36%)
CA 370..448 CDD:214520 22/80 (28%)
Cadherin_repeat 454..556 CDD:206637 37/104 (36%)
Cadherin_repeat 575..663 CDD:206637 26/88 (30%)
Cadherin_C_2 687..757 CDD:465139 1/12 (8%)
Blue background indicates that the domain is not in the aligned region.

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