DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb4

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001108073.1 Gene:Pcdhb4 / 291655 RGDID:1308912 Length:779 Species:Rattus norvegicus


Alignment Length:760 Identity:196/760 - (25%)
Similarity:313/760 - (41%) Gaps:162/760 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 ISSSQA----------EGYVDEN--SPIGTRV---------LDAHGNPISFMTTDADLSDSDPKP 430
            :|.|:|          .||:..|  ..:|.||         :...||. ..:..||:        
  Rat    25 VSGSEAIKYSMPEETESGYLVANLAKDLGLRVGELATRGARIHHRGNK-ELLQLDAE-------- 80

  Fly   431 DYIYELTTPSFNVTGDGILVVNEENLDRDP----PAPGRFKFQVVAREPRTNAASAPLSLTVHLR 491
                         ||:..|   :|.|||:.    ..|...:||::.:.| .......|.||    
  Rat    81 -------------TGNLFL---KEKLDREVLCGLTEPCVLQFQIILKNP-VQFFQTELQLT---- 124

  Fly   492 DVNDNAP-----KLAMVAPISITAGDQSESRLVTQVTATDNDEGPNAVVTYSI-----YHVSNNG 546
            |:||:||     ::.:..|.|:..|     .:.....|.|:|.|.|||..|::     :||..:.
  Rat   125 DINDHAPEFPDTEMLLTIPESVQPG-----TVFPLKAAQDSDIGSNAVQNYTVSPNLHFHVVTHS 184

  Fly   547 IQKFTINATTGEIRTQGR----------LLAGEQYSITVQATDIGG----LSSQAIVEVSVTPGP 597
                         ||.||          |...||..:|:..|.:.|    .|....|.:.|. ..
  Rat   185 -------------RTDGRKYPELVLDRALDREEQPELTLILTALDGGAPRRSGMTAVHIEVV-DI 235

  Fly   598 NTKPPRFQKPIYEVQVSEGAEINSTVTVVHAEDPENDA-----VVYSIISGN-DLRQFAVGQESG 656
            |...|:|.:.:|||||.|...:::.|..|.|.|  .||     |.||:..|: |.:.|.:.:.:|
  Rat   236 NDNAPQFVQSLYEVQVPENIPLDALVVTVSATD--LDAGIYGNVAYSLFQGSRDSQPFIIDEITG 298

  Fly   657 VIIVIRKLDRESLTRYQLILKAEDTGGLSSSATVNIKVTDINDKNPEFEASTLPYVFQVEEGKAQ 721
            .|.:.::||.|....|.:.:.|.|.||||...||.::|.|:||..||...||  :...|.|...:
  Rat   299 EIRLSKELDFEVTPYYNVEIAAVDGGGLSGKCTVAVQVLDVNDNAPELTIST--FSSPVPENSPE 361

  Fly   722 ASVGVVHATDADEGINAEITYSIPTDIPFTINATSGE---ILTAKELDYEQLNEYKFVVTAKD-G 782
            ..|.|....|.|.|.|..:..||..::||.:.:|...   ::|.:.||.|...||...:|..| |
  Rat   362 TVVLVFGVFDQDSGDNGRMVCSIQNELPFLLKSTFENYYTLVTERPLDRESRAEYNITITVSDLG 426

  Fly   783 APDARLGTA-SVTVMVLDLPDEVPKFSDARIDVHIPENEENFL-VATVQAFDPD--SMPEITYVL 843
            .|  ||.|. ::||.|.|:.|..|.|:.....:.:.||....| :.|:.|.|.|  |...|||.|
  Rat   427 TP--RLTTQHTITVKVSDINDNAPSFTQTSYTMFVHENNSPALHIGTISATDSDSGSNAHITYSL 489

  Fly   844 RKGN------AELFKVSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRN 902
            ...:      ..|..::..:|::..::.||||:.:..:..:|..:..........|:.|.|.|.|
  Rat   490 LPPDDPQLDLDSLISINADNGQLFALRALDYEALQSFEFLVGATDEGSPALSSQALVHVVVLDDN 554

  Fly   903 DLPPRFITVP-----DPVTVNDDQGI--GTIIATLPAIDGDGTSPGNV-VRYEIVGRGKAPKYFQ 959
            |..| |:..|     .|.|....:..  |.::..:.|:|.|  |..|. :.:::: :...|..|.
  Rat   555 DNVP-FVLYPLQNASPPCTELLPRAAEPGYLVTKVVAVDQD--SGQNAWLSFQLL-KATEPGLFS 615

  Fly   960 VDPDTGAVRIRDELRKEEDTEYQVDIRAYDLGEPQLSSVAPLRVDVHHLLSSGNN-------EIK 1017
            |....|.||....|.:.:..::::.:...|.||||.|:    .|.:|.||..|.:       |:.
  Rat   616 VWAHNGEVRTARLLSERDVPKHKLLLLVKDNGEPQRSA----SVTLHVLLVDGFSQPYLPLPEVA 676

  Fly  1018 LDNKLESGTGMSSESIGLAFSDDSYTTSVPESMEANSTLKLIQIV 1062
            ||.               .:.:|:.|..:..::.:.|:|.|:.::
  Rat   677 LDP---------------TYDEDNLTLYLVVALASVSSLFLLSVL 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637
Cadherin_repeat 393..496 CDD:206637 26/117 (22%)
Cadherin_repeat 518..594 CDD:206637 22/94 (23%)
Cadherin_repeat 608..699 CDD:206637 34/96 (35%)
Cadherin_repeat 710..802 CDD:206637 30/96 (31%)
Cadherin_repeat 814..903 CDD:206637 23/97 (24%)
Cadherin_repeat 915..1005 CDD:206637 21/92 (23%)
Cadherin_repeat 1041..1144 CDD:206637 4/22 (18%)
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb4NP_001108073.1 Cadherin_2 30..112 CDD:462413 21/106 (20%)
Cadherin_repeat 140..238 CDD:206637 27/116 (23%)
Cadherin_repeat 247..342 CDD:206637 35/96 (36%)
Cadherin_repeat 355..446 CDD:206637 30/92 (33%)
Cadherin_repeat 454..556 CDD:206637 24/101 (24%)
Cadherin_repeat 575..663 CDD:206637 23/94 (24%)
Cadherin_C_2 685..768 CDD:465139 4/22 (18%)
Blue background indicates that the domain is not in the aligned region.

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