DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb7

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001395766.1 Gene:Pcdhb7 / 291652 RGDID:1309422 Length:798 Species:Rattus norvegicus


Alignment Length:649 Identity:181/649 - (27%)
Similarity:282/649 - (43%) Gaps:78/649 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 DYFQ---IDESTGVLKQTKAVDTSTAKKY-DIIVKAEEVS-PGPQRFTTAKLEIFVKPVDANPPV 386
            ||.|   :|..||.|...:.:|......: |..|...:|| ..|.::...  |:.::.::.:.|.
  Rat    70 DYKQRLLLDPETGDLILREKLDREELCGFVDPCVLPFQVSLEKPVQYFQG--ELLIQDINDHAPE 132

  Fly   387 ISSSQAEGYVDENSPIGTRVLDAHGNPISFMTTDADLSDSDPKPDYIYELTTPSFNV----TGDG 447
            ....:....:.|||..||.:      |:: :..|.|:. |:....|... |.|.|:|    ..:|
  Rat   133 FPEGEILLKIPENSQPGTLL------PLN-LAQDLDVG-SNGLQQYTVS-TNPHFHVLTRNNSEG 188

  Fly   448 IL---VVNEENLDRDPPAPGRFKFQVVAREPRTNAASAPLSLTVHLRDVNDNAPKLAMVAPISIT 509
            ..   :|.:..|||:..|  .....::|.:..:...|....:.:.:.|:|||||:. :.:|..:.
  Rat   189 KKYPELVQDRALDREEQA--ELSLTLMALDGGSPPRSGTALVQILIMDINDNAPEF-VNSPYEVQ 250

  Fly   510 AGDQ--SESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRTQGRL--LAGEQ 570
            ..:.  .:|.::| |.|.|.|.|....|:|.::..|:...:.|:||..|||||.:..|  ...:.
  Rat   251 VPESCPPDSPILT-VLAWDADAGNFGSVSYGLFQASDEIKKTFSINKVTGEIRLKKELDFEKIKS 314

  Fly   571 YSITVQATDIGGLSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGA--EINSTVTVVHAEDPEN 633
            |.:.::|||.||||.:..|.:.|. ..|...|..........|.|.|  .|.|...|...:..||
  Rat   315 YHVKIEATDGGGLSGRGSVMIEVL-DVNDNAPELTISSLTSSVPENAPETIISIFRVGDRDSGEN 378

  Fly   634 DAVVYSIISGNDLRQFAVGQESGVIIVIRKLDRESLTRYQLILKAEDTG--GLSSSATVNIKVTD 696
            ..||.||.........:..:....::....|||||...|.:.:...|.|  .|::..|:.::|:|
  Rat   379 GKVVCSISENLPFLLKSTFKNFYTLVTESPLDRESRAEYNITITVSDLGTPRLTTQHTITVQVSD 443

  Fly   697 INDKNPEFEASTLPYVFQVEEGKAQA-SVGVVHATDADEGINAEITYS-IPTDIP-------FTI 752
            |||..|.|..::  |...|.|..:.| .:|.:.|||:|.|.||.|||| :|...|       .:|
  Rat   444 INDNAPAFTQTS--YTMFVHENNSPALHIGTISATDSDSGSNAHITYSLLPPQNPQLALTSLISI 506

  Fly   753 NATSGEILTAKELDYEQLNEYKFVVTAKDGAPDARLGTASVTVMVLDLPDEVP------KFSDAR 811
            |..:|::...:.||||.:..::|.|.|.||...|....|.|.|:|||..|..|      :.:.|.
  Rat   507 NPDNGQLFALRALDYEAVQAFEFHVGASDGGSPALSSQALVRVVVLDDNDNAPFVLYPLQNASAP 571

  Fly   812 IDVHIPE-NEENFLVATVQAFDPDSMPE--ITYVLRKGNAE-LFKVSEKSGEVRTIKGLDYESQK 872
            ....:|. .|..:||..|.|.|.||...  :::.|.|.... ||.|...:|||||.:.|......
  Rat   572 FTELLPRAAEPGYLVTKVVAVDADSGQNAWLSFQLLKATEPGLFIVWGHNGEVRTTRMLSERDVP 636

  Fly   873 QHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVPDPVTVNDDQGIGTIIATLPAIDGD 936
            :|:|               :|||.|    |..|||.::|...|.:.|  |......:||.:..|
  Rat   637 KHRL---------------LLLVKD----NGDPPRSVSVTLLVLLVD--GFSQPYISLPEVAPD 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637 14/60 (23%)
Cadherin_repeat 393..496 CDD:206637 24/109 (22%)
Cadherin_repeat 518..594 CDD:206637 27/77 (35%)
Cadherin_repeat 608..699 CDD:206637 25/94 (27%)
Cadherin_repeat 710..802 CDD:206637 37/100 (37%)
Cadherin_repeat 814..903 CDD:206637 26/92 (28%)
Cadherin_repeat 915..1005 CDD:206637 6/22 (27%)
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb7NP_001395766.1 Cadherin_2 32..112 CDD:462413 12/41 (29%)
Cadherin_repeat 140..238 CDD:206637 24/108 (22%)
Cadherin_repeat 246..343 CDD:206637 31/98 (32%)
Cadherin_repeat 355..447 CDD:206637 26/91 (29%)
Cadherin_repeat 455..557 CDD:206637 37/103 (36%)
Cadherin_repeat 571..652 CDD:206637 28/99 (28%)
Cadherin_C_2 688..770 CDD:465139
Blue background indicates that the domain is not in the aligned region.

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