DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb11

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001395689.1 Gene:Pcdhb11 / 291648 RGDID:1309608 Length:797 Species:Rattus norvegicus


Alignment Length:731 Identity:188/731 - (25%)
Similarity:300/731 - (41%) Gaps:142/731 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   368 FTTAKLEIFVKPVDANPPVISSSQAEGYVDEN---------SPIGTRVLDAH--GNPISFMTTDA 421
            |.|..|.::....:|....|......||:..|         ..:.||....|  ||. ..:..||
  Rat    16 FLTILLLLWKSGSEAIRYSIPEETESGYLVANLAKDLGLKVGKLATRGAQIHYKGNK-ELLQLDA 79

  Fly   422 DLSDSDPKPDYIYELTTPSFNVTGDGILVVNEENLDRD----PPAPGRFKFQVVAREPRTNAASA 482
            :                     ||:.:|.|   .|||:    ...|....||::...| ......
  Rat    80 E---------------------TGNLLLKV---KLDREVLCGVTEPCVLHFQIILENP-VQFFQT 119

  Fly   483 PLSLTVHLRDVNDNAP-----KLAMVAPISITAGDQSESRLVTQVTATDNDEGPNAVVTYSI--- 539
            .|.||    |:||::|     ::.:..|.|...|     .:.....|.|:|.|.||:..|::   
  Rat   120 ELQLT----DINDHSPEFPDTEMLLKIPESAQTG-----TVFPLKAAQDSDIGSNAIQNYTVSPN 175

  Fly   540 --YHVSNNGIQKFTINATTGEIRTQGR----------LLAGEQYSITVQATDIGG----LSSQAI 588
              :||..:.             ||.||          |...||..:|:..|.:.|    .|....
  Rat   176 LHFHVLTHS-------------RTDGRKYPELVLDRALDREEQPELTLTLTALDGGAPRRSGTTT 227

  Fly   589 VEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTVVHAEDPENDAVVYSIIS------GNDLR 647
            |.:.|. ..|...|:|.:.:|:||:.|.:.:::.:..|.|.|  .||.:|..::      |.|.:
  Rat   228 VRIEVV-DINDNAPQFIRTLYKVQILENSPLDTLIVTVSATD--LDAGIYGKVAYSLFQGGGDSQ 289

  Fly   648 QFAVGQESGVIIVIRKLDRESLTRYQLILKAEDTGGLSSSATVNIKVTDINDKNPEFEASTLPYV 712
            .|.:.:.:|.|.:.::||.|.::.|.:.:.|.|.|.||...||.|:|.|:||..||.....|..:
  Rat   290 PFVIDEITGEIRLSKELDFEEISHYNIEIAATDGGDLSGKCTVAIQVLDVNDNAPELTIRKLTVL 354

  Fly   713 FQVEEGKAQASVGVVHATDADEGINAEITYSIPTDIPFTINATSGE---ILTAKELDYEQLNEYK 774
              |.|..|:.:|.|...:|:|.|.|..:..|||.:|||.:..|...   ::|...||.|...||.
  Rat   355 --VPENSAETAVAVFSVSDSDSGDNGRMMCSIPNNIPFLLKPTFENYYMLVTEGPLDRENRAEYN 417

  Fly   775 FVVTAKD-GAPDARLGTA-SVTVMVLDLPDEVPKFSDARIDVHIPENEENFL-VATVQAFDPD-- 834
            ..:|..| |.|  ||.|. ::||.|.|:.|..|.|:....::.:.||....| :.|:.|.|.|  
  Rat   418 ITITVSDLGTP--RLTTQHTITVQVSDINDNAPAFTQTSYNLFVQENNSPALHIGTISATDSDSG 480

  Fly   835 SMPEITYVL------RKGNAELFKVSEKSGEVRTIKGLDYESQKQHQLTIGTIENDGNGP--GDT 891
            |...|||.|      :...:.|..::..||::..::.|||||.:.....:|.  .||..|  ...
  Rat   481 SNAHITYSLLQLQDQQLALSSLISINPDSGQLFALRALDYESLQAFDFQVGA--TDGGYPALSSQ 543

  Fly   892 ILLVVDVEDRNDLPPRFI------TVPDPVTVNDDQGIGTIIATLPAIDGDGTSPGNV-VRYEIV 949
            :|:.|.|.|.||..|..:      :.|....:..:...|.::..:.|:|.|  |..|. :.::::
  Rat   544 VLVHVVVLDDNDNDPIVLYPLQNTSAPCTELLPREAESGYLVTKVVAVDHD--SGQNAWLSFQLL 606

  Fly   950 GRGKAPKYFQVDPDTGAVRIRDELRKEEDTEYQVDIRAYDLGEPQLSSVAPLRV----------- 1003
             :...|..|.|....|.||....|.:.:..::::.:...|.||||.|:...|.|           
  Rat   607 -KATEPGLFSVWAHNGEVRTTRLLSERDVPKHRLLLLVKDNGEPQRSTSVTLHVLLVNSFSQPYL 670

  Fly  1004 ---DVHHLLSSGNNEI 1016
               :|.|....|:.|:
  Rat   671 PLPEVEHDPIHGDEEV 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637 3/14 (21%)
Cadherin_repeat 393..496 CDD:206637 26/117 (22%)
Cadherin_repeat 518..594 CDD:206637 21/94 (22%)
Cadherin_repeat 608..699 CDD:206637 29/96 (30%)
Cadherin_repeat 710..802 CDD:206637 33/96 (34%)
Cadherin_repeat 814..903 CDD:206637 28/99 (28%)
Cadherin_repeat 915..1005 CDD:206637 21/104 (20%)
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb11NP_001395689.1 Cadherin_2 30..112 CDD:462413 22/106 (21%)
Cadherin_repeat 140..238 CDD:206637 26/116 (22%)
Cadherin_repeat 247..342 CDD:206637 30/96 (31%)
Cadherin_repeat 352..446 CDD:206637 33/97 (34%)
Cadherin_repeat 454..556 CDD:206637 29/103 (28%)
Cadherin_repeat 575..662 CDD:206637 21/89 (24%)
Cadherin_C_2 687..769 CDD:465139 188/731 (26%)
Blue background indicates that the domain is not in the aligned region.

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