DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Pcdhb14

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:NP_001395668.1 Gene:Pcdhb14 / 291647 RGDID:1307591 Length:798 Species:Rattus norvegicus


Alignment Length:614 Identity:168/614 - (27%)
Similarity:264/614 - (42%) Gaps:89/614 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 EENLDRD----PPAPGRFKFQVVAREPRTNAASAPLSLTVHLRDVNDNAPKLAMVAPISITAGDQ 513
            :|.|||:    ...|....|||:.:.|     ...:...:.|:||||:||:. |...|.:...:.
  Rat    88 KEKLDREELCGSTNPCILPFQVLLKSP-----VQFIQGEIQLQDVNDHAPEF-MEDEILLKIVES 146

  Fly   514 SESRLVTQV-TATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRTQGRLLAGE-------- 569
            |.......: .|.|.|.|.|.|..|:|  .:|:.....|.|.:.|  |....|:..:        
  Rat   147 SHPGATFPLKIAQDLDVGSNTVQNYTI--STNSHFHVLTRNHSDG--RKYPELVLDKALDREKQA 207

  Fly   570 QYSITVQATDIG-----GLSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTVVHAE 629
            |..:|:.|.|.|     |.:...||.:.:    |...|.|.:.:|||||.|.:.:.|.|..|.|.
  Rat   208 QIRLTLTALDSGSPPKTGTTQVVIVVLDI----NDNAPEFAQGLYEVQVQENSPVGSLVITVSAR 268

  Fly   630 DPE---NDAVVYSIISGND--LRQFAVGQESGVIIVIRKLDRESLTRYQLILKAEDTGGLSSSAT 689
            |.:   :..:.||:...::  ||.|.:..::|.|.|.:.||.|....|::.::|.|.||||...|
  Rat   269 DLDAGTHGELSYSLFQSSNQVLRAFEINTDTGEIRVRKLLDFEETQSYRMEIEASDGGGLSGKCT 333

  Fly   690 VNIKVTDINDKNPEFEASTLPYVFQVEEGKAQASVGVVHATDADEGINAEITYSIPTDIPFTINA 754
            |.|.|||:||..||...|.|  |..:.|...:..|.|...:|.|.|.|.::..||...:||.:..
  Rat   334 VVINVTDVNDNAPELTMSLL--VSDIPENSPETVVAVFGISDPDSGDNGKMVCSIQDHLPFLLKP 396

  Fly   755 TSGE---ILTAKELDYEQLNEYKFVVTAKD-GAPDARLGTA-SVTVMVLDLPDEVPKFSDARIDV 814
            ....   ::|.:.||.|...||...:|..| |.|  ||.|. ::||.|.|:.|..|.|:.....:
  Rat   397 NEDNFYTLVTERALDRENRAEYNITITVSDLGTP--RLTTRHTITVQVSDINDNAPAFTQTSYTM 459

  Fly   815 HIPENEENFL-VATVQAFDPD--SMPEITYVL------RKGNAELFKVSEKSGEVRTIKGLDYES 870
            .:.||....| :.|:.|.|.|  |...|||.|      :.....|..::..:|::..::.:|||.
  Rat   460 FVRENNSPALHIGTISATDSDSGSNAHITYSLLPPQDPQLDLDSLISINADNGQLFALRAMDYEV 524

  Fly   871 QKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVP----------------DPVTVND 919
            .:..:..:...:....|.....|:.|.|.|.||..| |:..|                :|     
  Rat   525 LQAFEFHVSATDRGSPGLSSQALVRVVVLDDNDNAP-FVLYPLQNASAPYTELLPRVAEP----- 583

  Fly   920 DQGIGTIIATLPAIDGDGTSPGNV-VRYEIVGRGKAPKYFQVDPDTGAVRIRDELRKEEDTEYQV 983
                |.::..:.|:|.|  |..|. :.:::: :...|..|.|....|.||....|.:.:..::::
  Rat   584 ----GYLVTKVVAVDRD--SGQNAWLSFQLL-KATEPGLFSVWAHNGEVRTTRMLSERDVPKHRL 641

  Fly   984 DIRAYDLGEPQLSSVAPLRVDVHHLLSSG 1012
            .:...|.|||..|:    .|.:|.||..|
  Rat   642 LLLVKDNGEPPCSA----SVTLHVLLVDG 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204
Cadherin_repeat 146..259 CDD:206637
Cadherin_repeat 280..383 CDD:206637
Cadherin_repeat 393..496 CDD:206637 13/46 (28%)
Cadherin_repeat 518..594 CDD:206637 22/89 (25%)
Cadherin_repeat 608..699 CDD:206637 35/95 (37%)
Cadherin_repeat 710..802 CDD:206637 29/96 (30%)
Cadherin_repeat 814..903 CDD:206637 22/97 (23%)
Cadherin_repeat 915..1005 CDD:206637 19/90 (21%)
Cadherin_repeat 1041..1144 CDD:206637
Cadherin_repeat 1159..1264 CDD:206637
Pcdhb14NP_001395668.1 Cadherin_2 31..112 CDD:462413 8/23 (35%)
CA 158..241 CDD:214520 23/90 (26%)
Cadherin_repeat 248..344 CDD:206637 36/95 (38%)
Cadherin_repeat 357..448 CDD:206637 28/92 (30%)
Cadherin_repeat 456..558 CDD:206637 23/101 (23%)
Cadherin_repeat 572..665 CDD:206637 23/108 (21%)
Cadherin_C_2 688..770 CDD:465139
Blue background indicates that the domain is not in the aligned region.

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