DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and Cdh23

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:XP_017169419.1 Gene:Cdh23 / 22295 MGIID:1890219 Length:3361 Species:Mus musculus


Alignment Length:2303 Identity:492/2303 - (21%)
Similarity:744/2303 - (32%) Gaps:927/2303 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 ILLCSAVLGKSQMCEVETGQTNIILDIEESRESFIGQPTTPPELPIFGDP--DTEIALNLVFPKG 82
            ::.|.|||....:.....||.|                    .||.|.:.  ||.:.::...|.|
Mouse    14 LVTCYAVLWLLMLVPGSWGQVN--------------------RLPFFTNHFFDTYLLISEDTPVG 58

  Fly    83 QPIFQLNGKKLQ---------------------------LLQPLDRDEENLSHIVFQVS----CT 116
            ..:.||..:.:.                           |.|||||:.::...:.|.||    ..
Mouse    59 SSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVI 123

  Fly   117 TRSTGKKRTIPIIVRVSDINDNAPRFMNTPYEVTVPESTPVGTTIFRNIQALDKDAGVNGLVEYF 181
            ||.        :.::|.|:|||||.|.|.||.|.:||:|||||.|| .:.|.|.|.|..|.|.|.
Mouse   124 TRK--------VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF-IVNATDPDLGAGGSVLYS 179

  Fly   182 IAEGSPNSTNVEKYSADGYGTFAISFPHQGQVTVAKTLDFEKIQTYYLTIVASDRARNTADRLSS 246
            ....||              .|||. ..:|.|||.:.||:|..|.|.||:.|:|:.:...  ||:
Mouse   180 FQPPSP--------------FFAID-SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP--LST 227

  Fly   247 TTTLTVNIADSNDLDPSFIYSGCVSLDGACINPEYSASV----PAGSLLGVLTVLPERIQAVDLD 307
            ...|.:.|.|..|:||.|            ||..||.::    |.|:.:.|:|       |||.|
Mouse   228 LANLAIIITDMQDMDPIF------------INLPYSTNIYEHSPPGTTVRVIT-------AVDQD 273

  Fly   308 TINSP--IRYSFASGMPGNYADYFQIDESTGVLKQTKAVDTST---AKKYDIIVKAEEV----SP 363
            . ..|  |.|:..|   ||....|.:|..:|.|.....:|...   :..:.:.||..|:    :|
Mouse   274 K-GRPRGIGYTIVS---GNTNSIFALDYISGALTLNGLLDRENPLYSHGFILTVKGTELNDDRTP 334

  Fly   364 GPQRFTTAKLEIFVKPVDANPPVISSSQAEGYVDENSPIG------TRVLDAH------------ 410
            .....||. ..|.|..::.|.|..:||:....:.|.:.:|      .:|:|..            
Mouse   335 SDATVTTT-FNILVIDINDNAPEFNSSEYSVAITELAQVGFALPLFIQVVDKDEGLNSMFEVYLV 398

  Fly   411 GN------------------------PISFMTTDA---DLSDSDPKPDYI-YE------------ 435
            ||                        |:.:.|.|.   ||..::..||:: |.            
Mouse   399 GNNSHHFIISPTSVQGKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDN 463

  Fly   436 ---LTTPSFNVT-------GDGILVV----------NEEN-----------LDRDPPAPG----- 464
               .:.|.:||:       |..:|.|          .|.|           ||:|   .|     
Mouse   464 RPIFSQPLYNVSLYENITVGTSVLTVLATDNDVGTFGEVNYFFSDDPDRFSLDKD---TGLIMLI 525

  Fly   465 ---------RFKFQVVAREPRTNAASAPLSLTVHLRDVNDNAPKLAMVAPI-SITAGDQSESRLV 519
                     ||...|:||:......:.  .:.:::.|||||.|.....|.: ::...:.|.::||
Mouse   526 ARLDYELIQRFTLTVIARDGGGEETTG--RVRINVLDVNDNVPTFQKDAYVGALRENEPSVTQLV 588

  Fly   520 TQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTG-EIRTQGRLLAGEQYS-----ITVQAT 578
             ::.|||.|..||.::||||.:.|..| ..|.|:...| .:.:..|.|..||..     :||.|.
Mouse   589 -RLRATDEDSPPNNLITYSIVNASAFG-SYFDISIYEGYGVISVSRPLDYEQIPNGLIYLTVMAK 651

  Fly   579 DIGGLSSQAIVEVSVTP-GPNTKPPRFQKPIYEVQVSEGAEINSTVTVVHAEDPE------NDAV 636
            |.|.....:.|.|::.. ..|..||.|.||.|.|.|.|.....:||..::|.|.:      .:::
Mouse   652 DAGNPPLYSTVPVTIEVFDENDNPPTFSKPAYFVSVLENIMAGATVLFLNATDLDRSREYGQESI 716

  Fly   637 VYSIISGNDLRQFAVGQESGVIIVIRKLDRESLTRYQLILKAEDTG-------GL---------- 684
            :||:...:   ||.:...||.|.....||||:.:.|.||::|.|.|       |:          
Mouse   717 IYSLEGSS---QFRINARSGEITTTSLLDRETKSEYILIVRAVDGGVGHNQKTGIATVNVTLLDI 778

  Fly   685 ----------------------------------------------------------------- 684
                                                                             
Mouse   779 NDNHPTWKDAPYYINLVEMTPPDSDVTTVVAVDPDLGENGTLVYSIHPPNKFYSLNSTTGKIRTT 843

  Fly   685 ----------------------------------SSSATVNIKVTDINDKNPEFEASTLPYVFQV 715
                                              :|||||.:.:.|:||.:|.|.  .||:|.::
Mouse   844 HVMLDRENPDPVEAELMRKIIVSVTDCGRPPLKATSSATVFVNLLDLNDNDPTFR--NLPFVAEI 906

  Fly   716 EEG-KAQASVGVVHATDADEGINAEITYSIPTDIP---FTINATSGEILTAKELDYEQLNEYKFV 776
            .|| .|..||..|.|.|.|||:|..::|.:...:|   |.||:|||.:.|..|||.|::.||:..
Mouse   907 LEGTPAGVSVYQVVAIDLDEGLNGLVSYRMQVGMPRMDFVINSTSGVVTTTAELDRERIAEYQLR 971

  Fly   777 VTAKDGAPDARLGTASVTVMVLDLPDEVPKFSDARIDVHIPEN-EENFLVATVQAFDPD--SMPE 838
            |.|.|.....:..|:::||.|||:.||.|.|..|..:|.:.|: ...|.|..:...|.|  ...|
Mouse   972 VVASDAGTPTKSSTSTLTVRVLDVNDETPTFFPAVYNVSVSEDVPREFRVVWLNCTDNDVGLNAE 1036

  Fly   839 ITYVLRKGNAE-LFKVSEKSGEVRTIKGLDYESQKQHQLTIGTIEND--GNGPGDTILLVVDVED 900
            ::|.:..||.: .|.|..:...|||:.|||.|:...:.|.:..|:|.  |.....|..:.|.|.|
Mouse  1037 LSYFITAGNVDGKFSVGYRDAVVRTVVGLDRETTAAYTLVLEAIDNGPVGKRRTGTATVFVTVLD 1101

  Fly   901 RNDLPPRFI------TVPDPV-------------------------------------------- 915
            .||..|.|:      :||:.:                                            
Mouse  1102 VNDNRPIFLQSSYEASVPEDIPEGHSIVQLKATDADEGEFGRVWYRILHGNHGNNFRIHVGSGLL 1166

  Fly   916 ----------------------------------------TVNDD-----------------QGI 923
                                                    .|||:                 .||
Mouse  1167 MRGPRPLDRERNSSHVLMVEAYNHDLGPMRSSVRVIVYVEDVNDEAPVFTQQQYNRLGLRETAGI 1231

  Fly   924 GTIIATLPAIDGDGTSPGNVVRYEIV--GRGKAPKYFQVDPDTGAVRIRDELRKEEDTEYQVDIR 986
            ||.:..:.|.|.| |..|.:|.|.|:  ..||    |::|..||.:...|.|..|..|.|.:::.
Mouse  1232 GTSVIVVRATDKD-TGDGGLVNYRILSGAEGK----FEIDESTGLIVTVDYLDYETKTSYLMNVS 1291

  Fly   987 AYDLGEPQLS--------------------SVAPLRVDVHHLLSSGNNEIK-----LDN------ 1020
            |.| |.|..:                    |.|.....:...|:.|...::     :||      
Mouse  1292 ATD-GAPPFNQGFCSVYVTLLNELDEAVQFSNASYEAVIMENLALGTEIVRVQAYSIDNLNQITY 1355

  Fly  1021 --------------KLESGTGM-----------------------------------------SS 1030
                          |:::.||:                                         :.
Mouse  1356 RFDAYTSAQAKALFKIDAITGVITVKGLVDREKGDFYTLTVVADDGGPKVDSTVKVYITVLDEND 1420

  Fly  1031 ESIGLAFSDDSYTTSVPESMEANSTLKLIQIVNSKTSGDGPPAFRCEFVSGNGGGIFN-LSSADH 1094
            .|....|:.|| ..||||.......:..::..:.....:|...|  ...|||..|.|. ::|.|.
Mouse  1421 NSPRFDFTSDS-AISVPEDCPVGQRVATVKARDPDAGSNGQVVF--SLASGNIAGAFEIITSNDS 1482

  Fly  1095 GCNLLLIQPLDFENKSSYSL--------------------------------------------- 1114
            ...:.:.:|||.|....|.|                                             
Mouse  1483 IGEVFVAKPLDREELDHYILKVVASDRGTPPRKKDHILQVTILDVNDNPPVIESPFGYNVSVNEN 1547

  Fly  1115 --------QLRLTSHRYFVN--------------------------------------------- 1126
                    |:|.|.....:|                                             
Mouse  1548 VGGGTSVVQVRATDRDIGINSVLSYYITEGNEDMTFRMDRISGEIATRPAPPDRERQNFYHLVVT 1612

  Fly  1127 -------PLKDTTSVEIIVQDENDNAPEFEFNRLRGQQDTFYTVVTEEMD-VDTTILQVRATDRD 1183
                   .|..||.|.:.:.|||||||.|       ||..:..|:.|..| ::|:::.|:|.|.|
Mouse  1613 VEDEGTPTLSATTHVYVTIVDENDNAPVF-------QQPHYEVVLDEGPDTINTSLITVQALDLD 1670

  Fly  1184 SGKFGTVRYTLYDDDENRVNMPTSFFMMSEDTGVLRTAKHFKNENDFPL-----TFLVEARDSDG 1243
            .|..|||.|.:...  |.:|.    |.:::.|||:..||    |.|:.:     |.:|.|.|   
Mouse  1671 EGPNGTVTYAIVAG--NIINT----FRINKHTGVITAAK----ELDYEISHGRYTLIVTATD--- 1722

  Fly  1244 QEQG---SHR-TRARIVVNKLADINRMALSFPNAAPSDLRNYYTELEELLDKKTGLVSGIERMSS 1304
              |.   ||| |....|:..:.|||....:||       |:|....:                  
Mouse  1723 --QCPILSHRLTSTTTVLVNVNDINDNVPTFP-------RDYEGPFD------------------ 1760

  Fly  1305 QKYLAKNGSVIENPAATDIWFYLIDPKTEQLVSRKDSIVETTLLEPAARSELNIALPRATAENIS 1369
                     |.|......:|.:|...:.    |..:..||.::::.....|              
Mouse  1761 ---------VTEGQPGPRVWTFLAHDRD----SGPNGQVEYSVVDGDPLGE-------------- 1798

  Fly  1370 FPLERKEHVHKVKAAVAIDNEVFPF---TLIA-------ISLVILILGTIGIIYICISWSKYKNF 1424
            |.:...|.|.:|:..|.:|.|...|   |:.|       :|..:|    :||..:.|:.:     
Mouse  1799 FVISPVEGVLRVRKDVELDRETIAFYNLTICARDRGVPPLSSTML----VGIRVLDINDN----- 1854

  Fly  1425 KQRMRQYSSTNPPRYDPVIVNQQASSASETIANMKEYETQMLAMAVPPDVDDDLQLDFSAKNHAF 1489
                           |||::|                        :|.:|.       .::|...
Mouse  1855 ---------------DPVLLN------------------------LPMNVT-------ISENSPV 1873

  Fly  1490 SLDNVSYITHKENTNGGGQSSPSHSDATTATIATLRRHKNLNNASMNNNLAINNRQNTF------ 1548
            |    |::.|           ...|||.:..           ||.:..|:...||:..|      
Mouse  1874 S----SFVAH-----------VLASDADSGC-----------NALLTFNITAGNRERAFFINATT 1912

  Fly  1549 -----NRTLEMNT----RNNANPLASPPNGALSG---TLTLGRIKHQNSNH--YQNGAYNIDP-- 1597
                 ||.|:...    |...:...:|.|..::.   .|.|..:..:|.||  :..|.|..:.  
Mouse  1913 GIVTVNRPLDRERIPEYRLTVSVKDNPENPRIARKDFDLLLVSLADENDNHPLFTEGTYQAEVME 1977

  Fly  1598 -----------TGPNNMAHAKNNAYST-----MGRRGNTF------------------------- 1621
                       .||.....|..:.|:.     :|...:.|                         
Mouse  1978 NSPAGTPLTVLNGPILALDADEDVYAVVTYQLLGTHSDLFVIDNSTGVVTVRSGIIIDREAFSPP 2042

  Fly  1622 --------GDVGLLNGNGELMNATLGRN 1641
                    .|:|.|||...|....|..|
Mouse  2043 FLELLLLAEDIGQLNGTAHLFITILDDN 2070

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204 22/104 (21%)
Cadherin_repeat 146..259 CDD:206637 42/112 (38%)
Cadherin_repeat 280..383 CDD:206637 29/115 (25%)
Cadherin_repeat 393..496 CDD:206637 34/205 (17%)
Cadherin_repeat 518..594 CDD:206637 28/81 (35%)
Cadherin_repeat 608..699 CDD:206637 32/212 (15%)
Cadherin_repeat 710..802 CDD:206637 38/95 (40%)
Cadherin_repeat 814..903 CDD:206637 27/94 (29%)
Cadherin_repeat 915..1005 CDD:206637 32/212 (15%)
Cadherin_repeat 1041..1144 CDD:206637 31/208 (15%)
Cadherin_repeat 1159..1264 CDD:206637 34/114 (30%)
Cdh23XP_017169419.1 Cadherin_repeat 51..137 CDD:206637 18/93 (19%)
Cadherin_repeat 145..240 CDD:206637 42/112 (38%)
Cadherin_repeat 249..353 CDD:206637 29/115 (25%)
Cadherin_repeat 361..463 CDD:206637 14/101 (14%)
Cadherin_repeat 472..564 CDD:206637 19/96 (20%)
Cadherin_repeat 573..674 CDD:206637 30/102 (29%)
Cadherin_repeat 683..781 CDD:206637 26/100 (26%)
Cadherin_repeat 789..893 CDD:206637 7/103 (7%)
Cadherin_repeat 901..997 CDD:206637 38/95 (40%)
Cadherin_repeat 1006..1105 CDD:206637 28/98 (29%)
Cadherin_repeat 1113..1210 CDD:206637 3/96 (3%)
Cadherin_repeat 1225..1315 CDD:206637 27/95 (28%)
Cadherin_repeat 1324..1421 CDD:206637 7/96 (7%)
Cadherin_repeat 1433..1530 CDD:206637 19/98 (19%)
Cadherin_repeat 1540..1637 CDD:206637 11/96 (11%)
Cadherin_repeat 1645..1747 CDD:206637 36/116 (31%)
Cadherin_repeat 1759..1854 CDD:206637 23/143 (16%)
Cadherin_repeat 1862..1962 CDD:206637 24/132 (18%)
Cadherin_repeat 1970..2072 CDD:206637 15/101 (15%)
Cadherin_repeat 2080..2176 CDD:206637
Cadherin_repeat 2187..2296 CDD:206637
Cadherin_repeat 2308..2405 CDD:206637
Cadherin_repeat 2413..2511 CDD:206637
Cadherin_repeat 2520..2614 CDD:206637
Cadherin_repeat 2627..2725 CDD:206637
Cadherin_repeat 2742..2848 CDD:206637
Cadherin_repeat 2857..2958 CDD:206637
Blue background indicates that the domain is not in the aligned region.

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