DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad99C and dchs1a

DIOPT Version :10

Sequence 1:NP_733314.1 Gene:Cad99C / 43528 FlyBaseID:FBgn0039709 Length:1706 Species:Drosophila melanogaster
Sequence 2:XP_002664697.2 Gene:dchs1a / 100334632 ZFINID:ZDB-GENE-120410-3 Length:3275 Species:Danio rerio


Alignment Length:1801 Identity:446/1801 - (24%)
Similarity:698/1801 - (38%) Gaps:420/1801 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SLTPQQGLGFFGLLILLCSAVLGKSQMCEVETGQTNIILDIEESRESFIGQPTTPPELPIFGDPD 70
            |:...|.:||..:.::...|..|       |.|:....:.....|..|...|.|           
Zfish  1546 SVMEDQPVGFVVVYVMAVDADQG-------ENGRVTYRIQSGNVRGKFSINPDT----------- 1592

  Fly    71 TEIALNLVFPKGQPIFQLNGKKLQLLQPLDRDEE---NLSHIVFQVSCTTRSTGKKRTIPIIVRV 132
                                ..|.:|:|:||:||   ||:.:........||:.:..::.:|   
Zfish  1593 --------------------GSLSILRPIDREEEDLYNLTIVAEDHGLQQRSSSQLLSVQVI--- 1634

  Fly   133 SDINDNAPRFMNTPYEVTVPESTPVGTTIFRNIQALDKDAGVNGLVEYFIAEGSPNSTNVEKYSA 197
             |:||.||.|..:.||..:.|:.|.|:|:. .:.|.|.|.|.||:|.|....|...|.:      
Zfish  1635 -DVNDEAPYFQESQYEAFIAENQPAGSTVL-VVSASDMDQGTNGIVTYGSIVGDDFSIH------ 1691

  Fly   198 DGYGTFAISFPHQGQVTVAKTLDFEKIQTYYLTIVASDRAR--NTADRLSSTTTLTVNIADSNDL 260
                      |..|.:|..|.||.|....|.||:.|.|...  |.|     .||:.|.:.|.||.
Zfish  1692 ----------PVTGVITTTKALDREAQGVYALTVYARDGGSPPNFA-----KTTVRVTVLDENDN 1741

  Fly   261 DPSF--IYSGCVSLDGACINPEYSASVPAGSLLGVLTVLPERIQAVDLDTINSPIRYSFASGM-- 321
            .|:|  :|              ||..|            ||..:.|.|.||.:..:.|..||:  
Zfish  1742 RPAFGRVY--------------YSLEV------------PENQEPVTLFTIRATDQDSGDSGLVY 1780

  Fly   322 ----PGNYADYFQIDESTGVLKQTKAVDTSTAKKYDIIVKAEEVSPGPQRFTTAKLEIFVKPVDA 382
                .|::...|.:|:..|||..::|:|..:..||.:.|:|::... |...:|..|:|.|..::.
Zfish  1781 YRITDGDHFGDFHLDKKLGVLSTSRALDRESRAKYTLTVEAQDQGI-PSLTSTVTLDISVLDLND 1844

  Fly   383 NPPVISSSQAEGYVDENSPIGTRVLDAHGNPISFMTTDADLSDSDPKPDYIYELTTPSFNVTGDG 447
            |.||..||.....|.|::..|:.||:          ..|...|.......:|.|:..|     .|
Zfish  1845 NSPVFPSSSYSVEVSEDASAGSLVLE----------VSASDKDEGSNSQVVYFLSRES-----SG 1894

  Fly   448 ILVVNEE--------NLDRDPPAPGRFKFQVVARE-PRTNAASAPLSLTVHLRDVNDNAPKLAMV 503
            :.:|::.        .|||:..|  .:.|||.|.: ..||..::...:.||:.||||||| ..:.
Zfish  1895 MFIVDQHTGRIITAATLDREKVA--SYNFQVYAMDSSATNPRNSSAEVAVHILDVNDNAP-FFIT 1956

  Fly   504 AP--ISITAGDQSESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRTQGRL- 565
            .|  |:::....|..|::..:.|.|.|.|.|.    |:::...|.::.||||:.||.|:...:| 
Zfish  1957 DPLIINVSISSLSNHRVLATMRAEDKDFGANG----SVFYRFANPVKGFTINSLTGAIQATEKLQ 2017

  Fly   566 -LAGEQYSITVQATDIGGLSSQAI-VEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTVVHA 628
             |...|..:.|:|.|.|..|..:: |.:......:.:..||.:...:|.:.|.|...:.|..:||
Zfish  2018 ALTQSQRILIVEAMDQGNPSQSSLGVVIVYIREQSYQGVRFSRNTRDVSLQENAAKGTAVVQIHA 2082

  Fly   629 EDPE--NDAVVYSIISGNDLRQFAVGQESGVIIV--IRKLDRESLTRYQLILKAEDTGGLSSSAT 689
            :.|:  ...:.|||.|||..:.|::...:|.|.|  ...||.|...|.:|::||| |...||...
Zfish  2083 QYPDGSTSGINYSIFSGNKQQSFSISHHTGEIWVEDSTGLDFEETPRLRLVVKAE-TASSSSFMA 2146

  Fly   690 VNIKVTDINDKNPEFEASTLPYVFQVEEGKAQASVGVVH------ATDADEGINAEITYSIPTDI 748
            ||:.:.|:||..|.|:...  ||..|.|.:     |..|      |.|.|:|.|.::||||.:..
Zfish  2147 VNLLLQDVNDNLPRFQLHN--YVAYVREAQ-----GYDHPIIQVLANDLDQGQNGQVTYSIRSSS 2204

  Fly   749 P---FTINATSGEILTAKELDYEQLNEYKFVVTAKD-GAPDARL-GTASVTVMVLDLPDEVPKFS 808
            .   |.|:..:|.|.||..:|.|...:...|:.|.| |:|  || |:|::||:::||.|..|...
Zfish  2205 MSGLFKIDPITGSISTAAIMDREIWTQTNLVIMATDRGSP--RLAGSATLTVIIVDLNDNSPTIP 2267

  Fly   809 DARIDVHIPENEENFLVAT----VQAFDPDSMPEITYVL-----RKGNAELFKVSEKSGEVRTIK 864
            ..| :|.:|||.   |:.|    |...|.||.|.::|.|     .:|.   |.:....|.|....
Zfish  2268 VPR-EVRVPENT---LIGTMITQVTGNDVDSGPALSYTLLLDSDTQGK---FGIHRYGGGVSLTT 2325

  Fly   865 GLDYESQKQHQLTIGTIENDGNGPGDTILLVVDVEDRNDLPPRFITVPDPVTVNDDQGIGTIIAT 929
            .||:|.:..:.||:.:.::......:..:|   |||.||..|.|......||:.:....|:.:.|
Zfish  2326 PLDFEIKTWYTLTVSSSDSKQQSHANLTIL---VEDVNDNAPVFSQDLYEVTLAEHSPAGSSVIT 2387

  Fly   930 LPAIDGDGTSPGNVVRYEIVGRGKAPKYFQVDPDTGAVRIRDELRKEEDTE---YQVDIRAYDLG 991
            :.|.|.|....|.:. |.:|   .....|.:||..|.:.|:.|:  |.|::   ..|.|.|.|.|
Zfish  2388 VTATDKDSGENGRIT-YRVV---STKDMFYIDPSNGTLFIKKEV--EFDSQRPSILVVIEASDSG 2446

  Fly   992 EPQLSSVAPLRVDVHHLLSSGNNEIKLDNKLESGTGMSSESIGLAFSDDSYTTSVPESMEANSTL 1056
            .|.|::::.::|.|    |..|:...:                  |....|..||.|.....||:
Zfish  2447 TPPLTALSTVQVHV----SDVNDNAPV------------------FHQTEYRASVSEDEVPGSTI 2489

  Fly  1057 KLIQIVNSKTSGDGPPAFRCEF----VSGNGGGIFNLSSA-----DHGCN----LLLIQPLDFEN 1108
            ..::..:...|.|     .|.|    .|||.|..|.:.|:     .||..    |:|...||||.
Zfish  2490 LTLEAADGDLSRD-----NCGFDFAIASGNIGNTFQIESSVRFLEGHGFQTVGMLILADKLDFEI 2549

  Fly  1109 KSSYSLQLRLTSHRYFVNPLKDTTSVEIIVQDENDNAPEFEFNRLRGQQDTFYTVVTEEMDVDTT 1173
            .|||:|.:.::...  :.....:..|.|.|.|.|||.|.|       .:..:..||.|..:..|.
Zfish  2550 ASSYNLTIVVSDRG--IPQRSSSVPVLINVMDTNDNPPSF-------SRAEYSAVVNEGAERGTE 2605

  Fly  1174 ILQVRATDRDSGKFGTVRYTLYDDDENRVNMPTSFFMMSEDTGVLRTAKHFKNENDFPLTFLVEA 1238
            |||:.|.|.||...|.|:|::...|::.:      |.:.:.||.:|..:...:|......|:::|
Zfish  2606 ILQLFAIDPDSTPNGEVQYSISSGDDSEL------FTVDQWTGAVRLRRSLDSEKQSSHMFVIQA 2664

  Fly  1239 RDSDGQEQGSHRTRARIVVNKLADINRMALSFP--------------NAAPSDL------RNYYT 1283
              ||||   .|...|.:.| ::.|||.....||              ||..:.|      :..|.
Zfish  2665 --SDGQ---GHFALAPVTV-EIKDINNNRPYFPLKSLTASIRENQPQNALVTILHAIDHDKGAYG 2723

  Fly  1284 ELEELLDKKTG------LV---SGIER-------------------MSSQKYLAK-------NGS 1313
            ||...|....|      ||   ||..|                   |.:..|.|.       .|.
Zfish  2724 ELRYFLTYNAGNGKDSFLVNQTSGEVRTRFTFDYEKTNTFNFIAIAMDTGNYTATVTVQVFVTGE 2788

  Fly  1314 VIENPAATDIWFYLIDP---KTEQLVSR---------KDSIVETTLLEPAARSELNIA------- 1359
            ...:|..|:..|....|   |..|.:.:         .|.||..||...:...|||.:       
Zfish  2789 DEYDPVFTESDFAFHVPEGAKKGQSIGQVNANDEDGGVDGIVLYTLANSSPYFELNTSTGVISLK 2853

  Fly  1360 -------LPRATAENISFPLE-----RKEHVHKVKAAVAID------------NEVFPFTLIAIS 1400
                   :.|:..|.....|:     ..|:..|..|.:.:|            |.|....:.|..
Zfish  2854 MDAYHRHVTRSKRETRQMTLDVIAHSPLENSRKTSAQITVDVTHTSFGLTTDMNVVLASAITASL 2918

  Fly  1401 LVILILGTIGIIYICISWSKYKNFKQRMRQYSSTNPPRYDPVIVNQQASSASETIANMKEYETQM 1465
            ..|:.|..:.::...:...:||.                            .||...:..:.|.:
Zfish  2919 AAIVFLIIVVVVIFLLRSQRYKE----------------------------QETCTRIVTHGTVL 2955

  Fly  1466 LAMAVPPDVDDDLQLDFSAKNHAFSLDNVSYITHKENTNG----GGQSSPSHSDATTATIATLRR 1526
            .::       :|.::....|.:..:|...: .....|..|    ||...||||....:..|....
Zfish  2956 ESL-------EDSKVPGGDKLYHQTLPGYA-ADQSGNVGGAYTRGGSLDPSHSSGRGSAEAEAAE 3012

  Fly  1527 HKNLN-----------NASMNNNLAINNRQNTFNRTLEMNTRNNANP-------LASPPNGALSG 1573
            ...:.           ::||..::|.....:...:..:..:..:..|       ......|:|||
Zfish  3013 DDEIRMINEYPQVASISSSMQEHIAARGPDSGIQQDADQLSDISCEPGMDANQWFKGKKLGSLSG 3077

  Fly  1574 TLTLGRIKHQNSNHYQNGAYNIDPTGPN---NMAHAKNNAYSTMGR 1616
            ||...::.....   :.|.|    .|..   |::|.|:.|:...|:
Zfish  3078 TLLASQLPTYRD---EGGGY----LGVGRGLNISHPKDYAFPEDGK 3116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad99CNP_733314.1 CA_like 68..140 CDD:481204 15/74 (20%)
Cadherin_repeat 146..259 CDD:206637 34/114 (30%)
Cadherin_repeat 280..383 CDD:206637 29/108 (27%)
Cadherin_repeat 393..496 CDD:206637 27/111 (24%)
Cadherin_repeat 518..594 CDD:206637 23/78 (29%)
Cadherin_repeat 608..699 CDD:206637 31/94 (33%)
Cadherin_repeat 710..802 CDD:206637 36/102 (35%)
Cadherin_repeat 814..903 CDD:206637 26/97 (27%)
Cadherin_repeat 915..1005 CDD:206637 26/92 (28%)
Cadherin_repeat 1041..1144 CDD:206637 33/115 (29%)
Cadherin_repeat 1159..1264 CDD:206637 30/104 (29%)
dchs1aXP_002664697.2 Cadherin_repeat 45..135 CDD:206637
Cadherin_repeat 145..247 CDD:206637
Cadherin_repeat 256..354 CDD:206637
Cadherin_repeat 370..464 CDD:206637
Cadherin_repeat 472..571 CDD:206637
Cadherin_repeat 580..678 CDD:206637
Cadherin_repeat 686..778 CDD:206637
Cadherin_repeat 791..886 CDD:206637
Cadherin_repeat 900..990 CDD:206637
Cadherin_repeat 1000..1105 CDD:206637
Cadherin_repeat 1118..1208 CDD:206637
Cadherin_repeat 1227..1311 CDD:206637
Cadherin_repeat 1331..1424 CDD:206637
Cadherin_repeat 1432..1535 CDD:206637
Cadherin_repeat 1544..1638 CDD:206637 25/133 (19%)
Cadherin_repeat 1647..1741 CDD:206637 35/115 (30%)
Cadherin_repeat 1750..1845 CDD:206637 29/107 (27%)
Cadherin_repeat 1861..1950 CDD:206637 25/105 (24%)
Cadherin_repeat 1958..2048 CDD:206637 27/93 (29%)
Cadherin_repeat 2065..2157 CDD:206637 32/92 (35%)
Cadherin_repeat 2166..2262 CDD:206637 36/102 (35%)
Cadherin_repeat 2269..2362 CDD:206637 28/102 (27%)
Cadherin_repeat 2371..2466 CDD:206637 29/104 (28%)
Cadherin_repeat 2474..2583 CDD:206637 33/115 (29%)
Cadherin_repeat 2591..2686 CDD:206637 32/106 (30%)
Cadherin_repeat 2694..2790 CDD:206637 17/95 (18%)
Cadherin_repeat 2802..2896 CDD:206637 18/93 (19%)
Blue background indicates that the domain is not in the aligned region.

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