DRSC/TRiP Functional Genomics Resources

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Protein Alignment neo and matn1

DIOPT Version :9

Sequence 1:NP_651733.1 Gene:neo / 43523 FlyBaseID:FBgn0039704 Length:744 Species:Drosophila melanogaster
Sequence 2:NP_001093210.1 Gene:matn1 / 403023 ZFINID:ZDB-GENE-050307-3 Length:489 Species:Danio rerio


Alignment Length:391 Identity:70/391 - (17%)
Similarity:129/391 - (32%) Gaps:134/391 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 PGTLMLTDCLDTCRKNKTCQSVNYETGLC------VLFSAHADQLPGALTKSQFPVFTIYAQK-- 195
            ||.:||...|.........|:.....|||      |:|...:.:   ::..|:|....::..|  
Zfish     4 PGFVMLLCILGAQATVDLRQAAAMAAGLCNTKPTDVVFIVDSSR---SVRPSEFEQVKVFLAKVI 65

  Fly   196 SCLAVKP-CSRAW---YVDRVQN-YKLKTEVKRTVSVASRRECFELCLGEN-----DFTCRSANY 250
            ..|:|.| .:|..   |..||:| ..||:...:...|.:..:...|..|..     .|....| :
Zfish    66 DGLSVGPDATRVGVVNYASRVKNEVSLKSHKTKAALVKAVSKIEPLSTGTMTGLAIQFAMNVA-F 129

  Fly   251 DRTSGACELSELDRLTL--------------------AGSQAFQVNDG-----------SDYLEN 284
            ....|..:..::.::.:                    ||.:.|.:..|           |:.||:
Zfish   130 SEAEGGRKSPDISKVAIIVTDGRPQDNIRDIAARAREAGIEIFAIGVGRVDMTTLRQMASEPLED 194

  Fly   285 HCVDEPNKLCEFKRLPGRILKTVDSVYQEVSSI--DECRELCLNSP--YRCHSYDYNDTGDMVCR 345
            | ||........::|..:..:...:|..::.:.  .:|..:|:::|  ::|           .||
Zfish   195 H-VDYVESYSLIEKLTKKFQEAFCAVVSDLCATGDHDCEHICISTPGSFKC-----------ACR 247

  Fly   346 ----LSHHSRATLADVQEPFLEVPEASTYELTSCYNVTIECGGGDMLARIRTSKLFNGKVYAKGS 406
                |.:.||:                   .::|.|...:.                  |:....
Zfish   248 EGFTLMNDSRS-------------------CSACSNAATDV------------------VFLIDG 275

  Fly   407 PKSCSVDVKSALDFELRMNYHDLECNVRQSTAGRYVNDIIIQHHDMIVTSSDLGLALACQYDLTN 471
            .||...:     :|||               ..:::| :||...|:..|::.:||.   ||..|.
Zfish   276 SKSVRPE-----NFEL---------------VKKWIN-LIIDKLDVSETNTHVGLV---QYSSTV 316

  Fly   472 K 472
            |
Zfish   317 K 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neoNP_651733.1 PAN_1 120..197 CDD:278453 14/65 (22%)
PAN_AP_HGF 211..285 CDD:238532 18/110 (16%)
PAN_1 294..373 CDD:278453 11/86 (13%)
ZP 381..615 CDD:214579 17/92 (18%)
matn1NP_001093210.1 vWA_Matrilin 35..258 CDD:238752 41/238 (17%)
vWA_Matrilin 265..489 CDD:238752 17/95 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X161
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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