DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment neo and cut-5

DIOPT Version :9

Sequence 1:NP_651733.1 Gene:neo / 43523 FlyBaseID:FBgn0039704 Length:744 Species:Drosophila melanogaster
Sequence 2:NP_001257100.1 Gene:cut-5 / 187677 WormBaseID:WBGene00011104 Length:395 Species:Caenorhabditis elegans


Alignment Length:434 Identity:77/434 - (17%)
Similarity:150/434 - (34%) Gaps:118/434 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 ADVQEPFLEVP----EASTYELTSCYNVTIECGGGDMLARIR--TSKLFNGKVYAKG---SP--K 408
            |.|.:|.:|..    |.:.|...||.        |:.:.:::  |...|:|..:.:.   :|  :
 Worm    23 AIVGDPSVECGDDFFEVNIYHSCSCV--------GNFIIKVKFDTRTTFHGLAFVQNHLDNPDCR 79

  Fly   409 SCSVDVKSALDFELRMNYHDLECNVRQSTAGRYV---NDIIIQHHDMIVTSSDLGLALACQYDLT 470
            |.:....||.:..||:.:.......|.||:.|.:   .::::..:...:|.:|....:.|.|...
 Worm    80 SFASKTDSAKNSSLRLTFDQCAIEKRHSTSPRGLFLSTNVVVAFNPEFLTKNDRVFKVQCFYMEM 144

  Fly   471 NKSVSNGVDLDVRGDI-------MPALSEEVIVESPNVIMRITSRDGSDMMRSAEVGDPLALKFE 528
            .:.:...:.:.:....       ||....||:..||.          ...:..|.||..:..|:.
 Worm   145 ERRIQKVIQISMPPPTMHSKQLNMPVCKYEVLDGSPT----------GPPVYFATVGQMVYHKWT 199

  Fly   529 I-VDEQSPYEIFIRELVAMDGVDNSEITLIDSNGCPTDHFIMGPIYKGSVSGKMLLSNFD----- 587
            . .:.::.:.:.:......|| :...:.|::..||..|              |.||:|.:     
 Worm   200 CDTEHENTFCMLVHSCFVDDG-NGQRVQLLNDKGCALD--------------KYLLTNLEYPTDL 249

  Fly   588 -------AFKFPSSEVVQFRALVT-----PCMPSCEPVQCEQEDTSGEFRSLLSYGRKRRSLNTT 640
                   .:|:...:.:.|...::     |.:..|:...|                         
 Worm   250 MAGREAHVYKYADRDNMYFDCQISITVKEPGLDYCDVPSC------------------------- 289

  Fly   641 DDHPRPRRDIDTSKKSAPSDMLLVQSIQITDKFGFKQDKQESGDFYDGNETTFTANEEGHGF--- 702
            .|.||.||   ::...||.|.:...:..|.     .:|.:...|:...|:...:.|.....|   
 Worm   290 PDPPRRRR---SNTLPAPDDNITAIAAHIE-----YEDSEIISDYIIPNDDIISLNWLQRNFDMR 346

  Fly   703 ----CVNAIGLITAATIFLLTQLAVIA----IWTYCYQRRQKLQ 738
                |:.|||  |...:||...|.:|:    :...|::...||:
 Worm   347 ISELCMTAIG--TTLLVFLNAFLFIISLVSIVHVCCFRTSPKLE 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neoNP_651733.1 PAN_1 120..197 CDD:278453
PAN_AP_HGF 211..285 CDD:238532
PAN_1 294..373 CDD:278453 6/21 (29%)
ZP 381..615 CDD:214579 42/268 (16%)
cut-5NP_001257100.1 Zona_pellucida 53..290 CDD:421542 42/286 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X161
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.