DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment neo and H42K12.3

DIOPT Version :9

Sequence 1:NP_651733.1 Gene:neo / 43523 FlyBaseID:FBgn0039704 Length:744 Species:Drosophila melanogaster
Sequence 2:NP_508240.1 Gene:H42K12.3 / 180474 WormBaseID:WBGene00019272 Length:522 Species:Caenorhabditis elegans


Alignment Length:312 Identity:67/312 - (21%)
Similarity:107/312 - (34%) Gaps:77/312 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 SQAFQVNDGSDYLENHCVDEPNKLCEFKRLPGRILKTVDSVYQEVSSIDECRELC------LNSP 328
            |:|.:..|..:..:.|          |.......|::.|.:..:.:|.:||...|      .:.|
 Worm    17 SKAVKAKDSCEESKTH----------FFVTDNASLQSADPIVYKATSEEECLSACTKNRDKFDRP 71

  Fly   329 YRCHSYDYNDTGDMVCRLSHHSRATLADVQEPFLEVPEASTYELTSC--YNVTIECGGGDMLARI 391
            ..|||:.| |.....|.:.....|.:...|   :|......|....|  :|:..:|.....: |:
 Worm    72 IVCHSFTY-DHASFSCTIHKEKSAPVGSAQ---IENSVGKRYFEKICLSHNIPQQCAQTQFI-RV 131

  Fly   392 RTSKLFNGKVYA-----KGSPKSCS------VDVKSALDFELRMNYHDLECNVRQSTAGRYVNDI 445
            ..|.|..   ||     ..|.:||:      .|.|||:.|     |.|.||...:.:|.......
 Worm   132 DQSVLVG---YAVNMTLTDSIESCAAQCVQEADCKSAMYF-----YEDGECITNKESAMTKPAGF 188

  Fly   446 IIQHHDMIVTSSDLGLALACQYDLTNKSVSNGVDLDVRGDIMPALSEEVIVESPN-----VIMRI 505
            ..:.:|.::                  ...||.||:.:.:  |.:..|.:.|...     :|...
 Worm   189 TKEENDKVI------------------YFQNGCDLNKKNE--PTVETEEVQEEVRPVAHVLISET 233

  Fly   506 TSRDGSDMMRSA-EVGDPLALKFEIVDEQSPYEIF---IRELVAMDGVDNSE 553
            |.:..|.:.:.. |||:      |:..|..|.|.|   ..|..|..|.|..|
 Worm   234 TPKPDSPVEKVVEEVGE------EVKPEMKPEEQFDEKQEETNAQTGEDEEE 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neoNP_651733.1 PAN_1 120..197 CDD:278453
PAN_AP_HGF 211..285 CDD:238532 3/14 (21%)
PAN_1 294..373 CDD:278453 18/84 (21%)
ZP 381..615 CDD:214579 43/193 (22%)
H42K12.3NP_508240.1 PAN_AP 28..113 CDD:214680 19/98 (19%)
PAN_1 127..203 CDD:278453 20/102 (20%)
TSP1 385..424 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005301
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.