DRSC/TRiP Functional Genomics Resources

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Protein Alignment neo and let-653

DIOPT Version :10

Sequence 1:NP_651733.1 Gene:neo / 43523 FlyBaseID:FBgn0039704 Length:744 Species:Drosophila melanogaster
Sequence 2:NP_001021336.2 Gene:let-653 / 178120 WormBaseID:WBGene00002827 Length:812 Species:Caenorhabditis elegans


Alignment Length:435 Identity:83/435 - (19%)
Similarity:140/435 - (32%) Gaps:155/435 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 LMLTDCLDTCR---------KNKTCQSVNYETG------LCVLFSAHADQLPGALTKSQFPVFTI 191
            |.|..|...|.         |...|.:||::..      ||.:|..|..|......::. ..||.
 Worm    48 LSLKGCQSACSLGEDPVSPGKQLECAAVNHQASPDGFSHLCAVFQPHQLQNVDGYVEAD-DRFTF 111

  Fly   192 YAQKSCL-AVKPCSRAW--------YVDRVQNYKLKTEVKRTVSVASRRECFELCLGENDFTCRS 247
            | .|.|| :.:.||..:        |:|:      |:.:|.|.. |:..||...||.|..|.|||
 Worm   112 Y-WKYCLPSTRKCSGEYAFTYLSDRYMDQ------KSVIKWTTK-ANLEECLSDCLDEKSFECRS 168

  Fly   248 ANYDRTSGACELSELDRLTLAGSQAFQVNDGS----DYLENHCVDEPNKLCEFKRLPGRILKTVD 308
            .:::||.|.|.:|:..:  ::..:|.::|:..    ||.||:|                      
 Worm   169 ISFNRTDGGCHMSKDSQ--ISRPEAIRLNNNPNYRIDYYENNC---------------------- 209

  Fly   309 SVYQEVSSIDECRELCLNSPYRCHSYDYNDTGDMVCRLSHHSRATLADVQEPFLEVPEASTYELT 373
                                                                         |.|:
 Worm   210 -------------------------------------------------------------YNLS 213

  Fly   374 SCYNVTIECGGGDMLARIRTSKLFNGKVYAKGSPKSCSVDVKSALDFELRMNYHDLECNVRQSTA 438
            ..:....||....:...:::...:.|.:|......:|..:.|.|.:|:....|..:..|...|. 
 Worm   214 ESFTFKHECRDNGISVSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQTVSKNCSDSI- 277

  Fly   439 GRYV-NDIIIQHHDMIVTSSDLG---LALACQYDLTNK--------------SVSNGVDLDVRGD 485
             :|. |:::::    :|.|:| |   |......|||.:              :..:...||.|..
 Worm   278 -KYKGNEMVLE----VVLSTD-GIEPLYFITPEDLTYQAKCPISGVKAKDPANTKSSAHLDNRNK 336

  Fly   486 IMPALSEEVIVESPNVIMRITSRDGSDMMRSAEVGDPLALKFEIV 530
            .|.|        |.:.:..:.|:.|.|.........||....|::
 Worm   337 AMEA--------SAHALFELLSKTGDDEALQNTFPLPLTTTTEVI 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neoNP_651733.1 PAN_1 120..197 CDD:459635 17/69 (25%)
PAN_AP_HGF 211..285 CDD:238532 23/77 (30%)
PAN_1 294..373 CDD:459635 1/78 (1%)
ZP 381..615 CDD:214579 33/168 (20%)
let-653NP_001021336.2 PAN_AP_HGF 124..208 CDD:238532 26/92 (28%)
ZP <606..727 CDD:214579
Blue background indicates that the domain is not in the aligned region.

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