DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and ATS1

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_009382.2 Gene:ATS1 / 851213 SGDID:S000000018 Length:333 Species:Saccharomyces cerevisiae


Alignment Length:424 Identity:83/424 - (19%)
Similarity:135/424 - (31%) Gaps:130/424 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1193 LYSLGNNNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHNAAVA-DGKLYMWGWGIYGQL 1256
            :|:.|:|...|||:|....|......|...||..:..:..|..|:..:. ||.|...|....|:|
Yeast     4 VYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDNRRGEL 68

  Fly  1257 GQGSCENIATPQLVSFFKFKKILQISLGHAHTLVLCGAPNSHMEANHCG--NELFVFGSNHFGQL 1319
            ...                :.:.|:   |....|...||...:.   ||  ..:.|.......|.
Yeast    69 DSA----------------QALRQV---HDWRPVEVPAPVVDVA---CGWDTTVIVDADGRVWQR 111

  Fly  1320 GTGNSDHGDTKTNLPV-----RLEVGDCSLRLIHTKFFTNLAVDEQDRLFTWGSSPQALRLANQI 1379
            |.|..:.  |:.::|:     |:.|..|         |.|..|.:..|::.|||           
Yeast   112 GGGCYEF--TQQHVPLNSNDERIAVYGC---------FQNFVVVQGTRVYGWGS----------- 154

  Fly  1380 KRRANAKQKMEENQQRELLSKQLEATLLPAPIPSTSTLVEPTTSYAAVVAGSTPKSSVSDTKDCQ 1444
                |.|.:::|                    |.:.:|.||...|.   .||.....|:..||..
Yeast   155 ----NTKCQLQE--------------------PKSRSLKEPVLVYD---TGSVAVDYVAMGKDFM 192

  Fly  1445 DVQNEAAPSDATETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRILQISSG 1509
                                             |:|.|.....|.:..|....|:..:  |....
Yeast   193 ---------------------------------VIVDEGGRIVHASGRLPTGFELKQQ--QKRHN 222

  Fly  1510 LFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVLKPSPIDSIERPMY-VDCGSDFTLVMTTD-- 1571
            |...|:.:|   ::.|...|.   ..|...|....:..|.:.::.|:. |..||:..::.|.:  
Yeast   223 LVVLCMWTS---IHLWNARLN---TVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQE 281

  Fly  1572 -----HVVRAFGGNSNGQCGRDLG--PSVERMRQ 1598
                 :.|..:|...:|.||...|  |.::.:.|
Yeast   282 GKSHCYNVYCWGWGEHGNCGPQKGSQPGLQLVGQ 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 80/410 (20%)
RCC1_2 1175..1200 CDD:290274 2/6 (33%)
RCC1 1193..1240 CDD:278826 13/46 (28%)
RCC1 1242..1291 CDD:278826 8/48 (17%)
RCC1_2 1503..1532 CDD:290274 6/28 (21%)
RCC1 1522..1568 CDD:278826 9/46 (20%)
RCC1_2 1558..1584 CDD:290274 6/32 (19%)
ATS1NP_009382.2 ATS1 1..333 CDD:227511 83/424 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5530
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.930

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