DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and PRAF1

DIOPT Version :10

Sequence 1:NP_733309.3 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_565144.1 Gene:PRAF1 / 844030 AraportID:AT1G76950 Length:1103 Species:Arabidopsis thaliana


Alignment Length:773 Identity:172/773 - (22%)
Similarity:261/773 - (33%) Gaps:229/773 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1044 PALRPIVSHNSDCAMSNDNNPQLFEFCKSLIETYLAVLIHMESQRVKYDSIVNALSNFRINYEDN 1108
            |.:.|..|..|..|:.|.|                     |:::       |:....||::....
plant   185 PEVPPTDSEKSHVALDNKN---------------------MQTK-------VSGSDGFRVSVSSA 221

  Fly  1109 QFAIESSRFKPISAGCAYCACVVDGTAYFWG--------SSGI---PSYYSAQKSTEPPEPAHAV 1162
            |   .||     |.|.|.......|..|.||        ..||   .||.:.:.....|:|    
plant   222 Q---SSS-----SHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKP---- 274

  Fly  1163 KSLDLLSQLNLQVHAIKCGRQHTLILTNNG-LYSLGNNNLCQL--GIGRHMQMALQPMLVTALDG 1224
                |.|.:.|.||.|.||.:|...:|..| :::.|..:..:|  |||:.:   ..|.||.:|..
plant   275 ----LESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDV---FHPRLVESLTA 332

  Fly  1225 -MNITMLEAGQYHNAAVA-DGKLYMWGWGIY--GQLGQGSCENIATP-QLVSFFKFKKILQISLG 1284
             .::..:..|::|..||. .|:||.||.|.:  |.||.||..:...| ::....:...:..:|.|
plant   333 TSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCG 397

  Fly  1285 HAHTLVLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDHGDTKTNLPVRLEVGDCS-LRLI- 1347
            ..||.::...           ..||.||...||.||     |||.:| :....||...| ||.| 
plant   398 PWHTALITSY-----------GRLFTFGDGTFGVLG-----HGDKET-VQYPREVESLSGLRTIA 445

  Fly  1348 ------HTKFFTNLAVDEQD-------RLFTWGSSPQALRLANQIKRRANAKQKMEENQQRELLS 1399
                  ||.....:.|.:.:       :|||||...         |.|.....|          .
plant   446 VSCGVWHTAAVVEIIVTQSNSSSVSSGKLFTWGDGD---------KNRLGHGDK----------D 491

  Fly  1400 KQLEATLLPAPIP--------STSTLVEPTTSYAAVVAGSTPKSSVSDTKDCQDVQNEAAPSDAT 1456
            .:|:.|.:||.|.        ..|..|..|||......|||....:.:.:               
plant   492 PRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGQVFTMGSTVYGQLGNLQ--------------- 541

  Fly  1457 ETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRILQISSGLFHFCLISSSCT 1521
                                         |:...|.||:....:..:.:||.|.:|...::|...
plant   542 -----------------------------TDGKLPCLVEDKLASEFVEEISCGAYHVAALTSRNE 577

  Fly  1522 LYTWGKNLEHQLGTEDKDRRAVLKPSPIDSIE--RPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQ 1584
            :|||||....:||..|.:.|.|  |:.:::::  ...|:.|||::|..:.....|   .|....|
plant   578 VYTWGKGANGRLGHGDLEDRKV--PTIVEALKDRHVKYIACGSNYTAAICLHKWV---SGAEQSQ 637

  Fly  1585 CGR-DLGPSVERMRQ-------------------RVVCLPATKRLVRFESQC---VEVPVEIN-- 1624
            |.. .|.....|.|.                   |....|:..||.|....|   :....|||  
plant   638 CSTCRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEINDT 702

  Fly  1625 ------LPR----PRIRLDQDPVRYLKVMPPYQPHFLQPANISFDQHCSVGTPNYKSSTEHAATG 1679
                  :||    .|.|||:..:|..|         ...:|:...:............|:..:.|
plant   703 NRRNSAVPRLSGENRDRLDKSEIRLAK---------FGTSNMDLIKQLDSKAAKQGKKTDTFSLG 758

  Fly  1680 QDSD--DMLSSLENLSQNDASFSYNAPVLGDAHSSL-DMDYTP------EEQSYVPLP 1728
            ::|.  .:|...:.:..|........|.|..|.|.: ....:|      ..:|..|:|
plant   759 RNSQLPSLLQLKDAVQSNIGDMRRATPKLAQAPSGISSRSVSPFSRRSSPPRSATPMP 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_733309.3 ATS1 1181..1587 CDD:444065 104/438 (24%)
PRAF1NP_565144.1 PH_PLC_plant-like 14..124 CDD:270171
ATS1 285..624 CDD:444065 102/423 (24%)
FYVE 627..695 CDD:214499 13/70 (19%)
COG1340 <828..909 CDD:440951
BRX_N 879..>908 CDD:404581
BRX 1022..1077 CDD:429960
Blue background indicates that the domain is not in the aligned region.

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