DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ca and AT1G19880

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_173417.2 Gene:AT1G19880 / 838576 AraportID:AT1G19880 Length:538 Species:Arabidopsis thaliana


Alignment Length:482 Identity:106/482 - (21%)
Similarity:176/482 - (36%) Gaps:132/482 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1171 LNLQVHAIKCGRQHTLILTNNG-LYSLGNNNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQ 1234
            :|::..|..|...|.:.|...| .|:.|.|...|||.|..:|.. :|.:|:.|....|....||:
plant    56 VNIRFVATGCASFHCVALDVEGRCYTWGRNEKGQLGHGDMIQRD-RPTVVSGLSKHKIVKAAAGR 119

  Fly  1235 YHNAAVA-DGKLYMWGWGIYGQLGQGSCEN-------IATPQLVSFFKFKKILQISLGHAHTLVL 1291
            .|...|: ||:...:||..|||||.||.:|       .:||           |...:....|.|.
plant   120 NHTVVVSDDGQSLGFGWNKYGQLGLGSAKNGFVSVEVESTP-----------LPCVVSDEVTNVA 173

  Fly  1292 CGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDHGDTKTNLPVRLE-------------VGDCS 1343
            |||..:...::..|..:...|...:||||.|..:..:.|.: .|||.             .|:..
plant   174 CGADFTVWLSSTEGASILTAGLPQYGQLGHGTDNEFNMKDS-SVRLAYEAQPRPKAIASLAGETI 237

  Fly  1344 LRLI----HTKFFTNLAVDEQDRLFTWGSSPQALRLANQIKRRANAKQKMEENQQRELLSKQLEA 1404
            :::.    ||     :|||:...::|||..... ||.::.::...|.::::..|:..:|      
plant   238 VKVACGTNHT-----VAVDKNGYVYTWGFGGYG-RLGHREQKDEWAPRRIDVFQRNNVL------ 290

  Fly  1405 TLLPAPIPSTSTLVEPTTSYAAVVAG------STPKSSVSDTKDCQDVQNEAAPSDATETIAPAS 1463
                   |..:.|...:.:.|....|      ...|::..|.                       
plant   291 -------PPNAILSAGSANSACTAGGGQLYMWGKIKNNGDDW----------------------- 325

  Fly  1464 AKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRILQISSGLFHFCLISSSCTLYTWGKN 1528
                           :.|:|         ::|.|....|.:. |..:.||....|||  .:||..
plant   326 ---------------MYPKP---------MMDLSGWNLRWMD-SGSMHHFVGADSSC--ISWGHA 363

  Fly  1529 LEHQLGTEDKDRRAVLKPSPIDSIE--RPMYVDCGSDFTLVMT--TD-----HVVRAFGGNSNGQ 1584
            ...:||.....:::...|..:|.:|  ..|.|.||...::|:.  ||     ..:..:.|..:  
plant   364 QYGELGYGPNGQKSSAAPKKVDMLEGMHVMGVACGFCHSMVIVDRTDIADRLEQLEVYDGKGS-- 426

  Fly  1585 CGRDLGPSVERMRQRVVC---LPATKR 1608
                |..|||.:::..:.   ...|||
plant   427 ----LEESVEEVKEETLAPKQQAVTKR 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 99/457 (22%)
RCC1_2 1175..1200 CDD:290274 7/25 (28%)
RCC1 1193..1240 CDD:278826 15/46 (33%)
RCC1 1242..1291 CDD:278826 16/55 (29%)
RCC1_2 1503..1532 CDD:290274 8/28 (29%)
RCC1 1522..1568 CDD:278826 11/47 (23%)
RCC1_2 1558..1584 CDD:290274 7/32 (22%)
AT1G19880NP_173417.2 ATS1 38..384 CDD:227511 89/409 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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