DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and AT3G47660

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_001325559.1 Gene:AT3G47660 / 823920 AraportID:AT3G47660 Length:990 Species:Arabidopsis thaliana


Alignment Length:1236 Identity:247/1236 - (19%)
Similarity:407/1236 - (32%) Gaps:406/1236 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   830 QLSAMALKSTYLLRSRYLGHPLLKGILGDITYRHSEDVRVIL---PEKHEEEDVNSGVFCSDYHY 891
            |..|:..|..|||:....|.|..      ..:|.|.|...:|   .:|.:...::|         
plant    19 QAIAILKKGAYLLKYGRRGKPKF------YPFRLSSDEIYLLWYCGKKEKRLKLSS--------- 68

  Fly   892 GVDESISALQMSPSSQF----------------HLANLLLITLAEKAVN-DKNYIP--LWNFLVT 937
             |...|...:.:.|.:|                ::||.|.|..|...:. ....:|  |::...|
plant    69 -VTRIIPGQRTNFSRRFSDDILNPPRNINPFLLYMANGLSIWYARTRMKLSSGSLPFALFSHETT 132

  Fly   938 NSKYHTNMTSIVLCQSGLFSSAIILAKIRGVCLDTFNALISVVAQ--EFGWYNELNVCLYNL--- 997
            ...::....::||...  ..:.::.|:.|....|     :|.|.|  .|.|       |::.   
plant   133 LLHWYFTQEAVVLLLK--MENKVVRARTRSPTSD-----LSAVTQAMRFCW-------LFSFFMI 183

  Fly   998 -SENIFLETITYLPHVSMDYFAFIQEKLHHIRPCVLQRLSKQLNPFSPALRPIVSHNSDCAMSND 1061
             ....|| .|.:|.|:     |.:||                             |....:.|:.
plant   184 APSGCFL-LIIFLSHL-----ALLQE-----------------------------HAKKASGSHC 213

  Fly  1062 NNPQLFEFCKSLIETYLAVLIHMESQRVKYDSIVN--------ALSNFRINY-----EDNQFAIE 1113
            |.||......|.:.:..|||     :.:..|.:|:        .:.|...|:     :.::::|.
plant   214 NTPQRLGKVFSEVLSQTAVL-----KALSLDELVHKPHTSPPETIENRPTNHSSPGVDTSKYSIS 273

  Fly  1114 S--------SRFKPISAGCAYCACVVDGTAYFWGSS---GI------PSYYSAQKSTEPPEPAHA 1161
            |        |.|:.:.:.|         ..:.||.|   |:      .|..|:...|:...|.  
plant   274 SAVSSSSQGSTFEDLKSLC---------DVFVWGESIGDGLLGGGMHKSGSSSSLMTDSFLPK-- 327

  Fly  1162 VKSLDLLSQLNLQVHAIKCGRQHTLILTNNG-LYSLGNNNLCQLGIGRHMQMALQPMLVTALDGM 1225
                .|.|.:.|...:|.||..:.:::|..| :||.|..:..:||.| .......|.|:...:|.
plant   328 ----VLKSHVALDAQSISCGTNYAVLVTKQGQMYSWGEESGGRLGHG-VCSYVPHPKLIDEFNGS 387

  Fly  1226 NITMLEAGQYHNAAV-ADGKLYMWGWGIY--GQLGQGSCENIATP-----QLVSFFKFKKILQIS 1282
            .:.:.:.|::|..|| |.|.||.||.|.:  |.||.||..:...|     |:...:    :..||
plant   388 TVELADCGEFHTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRILGQMEGIY----VKAIS 448

  Fly  1283 LGHAHTLVLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDHGD-TKTNLPVRLE-VGDCSLR 1345
            .|..||..:...           .:||.||...||.||     ||| ..||:|..:| :..|  |
plant   449 CGPWHTAFVTSE-----------GKLFTFGDGTFGALG-----HGDRISTNIPREVEALNGC--R 495

  Fly  1346 LI-------HTKFFTNL--AVDEQDRLFTWGSSPQALRLANQIKRRANAKQKMEENQQRELLSKQ 1401
            .|       |:....::  ......:|||||..... ||.:                      ..
plant   496 TIKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDDG-RLGH----------------------GD 537

  Fly  1402 LEATLLPAPIPSTSTLVEPTTSYAAVVAGSTPKSSVSDTKDCQDVQNEAAPSDATETIAPASAKA 1466
            :|..|:|:.:....     |||:..|..|    .|::           .|.|.:.:..|..:|  
plant   538 IECRLIPSCVTELD-----TTSFQQVACG----QSIT-----------VALSMSGQVYAMGTA-- 580

  Fly  1467 APPPVPVASPPVLVPEPDPTEHL--TPHLVDTSEVAGRILQISSGLFHFCLISSSCTLYTWGKNL 1529
                             ||:..:  .|..::.......:.:::.|..|..:::|...:|||||..
plant   581 -----------------DPSHDIVRAPSCIEGGLGKSFVQEVACGFHHIAVLNSKAEVYTWGKGS 628

  Fly  1530 EHQLGTEDKDRRAVLKPSPIDSI--ERPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQCGRDLGPS 1592
            ..|||..|.:.|.:  |:.:.::  ::...|.|||::|   .|..:.:...|..:.:|       
plant   629 NGQLGHGDTEYRCM--PTLVKALKGKQVRKVVCGSNYT---ATICLHKPITGTDSTKC------- 681

  Fly  1593 VERMRQRVVCLPATKRLVRFESQCVEVPVEINLPRPRIRLDQDPVRYLKVMPPYQPHFLQPANIS 1657
                                 |.|                 :.|..|::.:     |........
plant   682 ---------------------SGC-----------------RHPFNYMRKL-----HNCYNCGSV 703

  Fly  1658 FDQHCSVGTPNYKSSTEHAATGQDS------DDMLSSLENLSQ------NDASFSYNAPVLGDAH 1710
            |...|:     .|.|...|...:.:      ||....||.:.:      |.|.||         :
plant   704 FCNSCT-----SKKSLAAAMAPKTNRPYRVCDDCYIKLEGIRESLATPANSARFS---------N 754

  Fly  1711 SSLDMDYTPEEQSYVPLPEQAVGSGMPANAEQLLGRDDDD-----------------GSTYTQST 1758
            :||...|..:|....|             ..|||..|..|                 |.:.|.|.
plant   755 ASLPSSYEMDEIGITP-------------QRQLLRVDSFDFFRQTKHADLKTIGETSGGSCTSSI 806

  Fly  1759 EG----MGESSLQHLRHYIHYCLYAFHGLYNPDK--IGECARPHRNEYRIR---ICMLNFR---F 1811
            ..    .|..:|:.:|....  |.:|..:....|  ...||........||   .|.|.|.   .
plant   807 HSNMDIKGSFNLKGIRRLSR--LTSFDSVQEEGKQRTKHCASKSDTSSLIRHSVTCGLPFSRRGS 869

  Fly  1812 VEAFRLCLQSCGSAQRTLKLFEYFSKDTGYVPLRRTDLKHLIYHLCLHFLERKFDMLECERFFMG 1876
            ||.|.|.::|  |...::.....|:.|.       ||      |..|..:.:|.:  :|....:.
plant   870 VELFPLSIKS--SPVESVATTSDFTTDI-------TD------HELLQEVPKKSN--QCLSHEIS 917

  Fly  1877 DLDYYLLELAYVFYFNNNNSTLEQNLNQKFKQLIAAADSNQAATSAGQELEQLQDTDVIFDSFTV 1941
            .|...:.||..      .:..||..|.:..|:|      ..|...|..:.|:::.::.|..|.|:
plant   918 VLKAQVEELTL------KSKKLETELGKTSKKL------EVAVLMARDDAEKIKSSEEIVRSLTL 970

  Fly  1942 K 1942
            :
plant   971 Q 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 105/453 (23%)
RCC1_2 1175..1200 CDD:290274 8/25 (32%)
RCC1 1193..1240 CDD:278826 11/46 (24%)
RCC1 1242..1291 CDD:278826 18/55 (33%)
RCC1_2 1503..1532 CDD:290274 8/28 (29%)
RCC1 1522..1568 CDD:278826 16/47 (34%)
RCC1_2 1558..1584 CDD:290274 7/25 (28%)
AT3G47660NP_001325559.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22870
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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