DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and Rcbtb1

DIOPT Version :10

Sequence 1:NP_733309.3 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_082040.2 Gene:Rcbtb1 / 71330 MGIID:1918580 Length:531 Species:Mus musculus


Alignment Length:431 Identity:86/431 - (19%)
Similarity:149/431 - (34%) Gaps:142/431 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 NGSAVSLPVMVFIHGGGY-----FFGSADPQLYGPERILATKQVILVTLQYRLGVLGFLSTGDAH 171
            |||..| .|:|..:|..|     .||...|:   ||.....|:|:|..|      |.||..|...
Mouse    65 NGSTAS-HVLVKENGTSYKDLDIIFGVELPK---PEDFQIIKEVVLSCL------LDFLPKGVNK 119

  Fly   172 ATGNYGMLDQVLAL----RWVNRHIGAFGGDPHS----VTLFGESAGGASVQLHMMSPL------ 222
                    |::.||    .:|.:.:..|  ..|.    ::|...|  |.:|:|..::.|      
Mouse   120 --------DKITALTMKEAYVQKMVKVF--TEHDRWSLISLSNNS--GKNVELKFVNSLRRQFEF 172

  Fly   223 SVGLFQRAIIMSGSALAVWSLPIQDPLALARKQAKLVGVSEADELTTAELVDVLQYLDAKVLTAS 287
            ||..||  ||:...        :|..|...|::|     :|..|             |....:|.
Mouse   173 SVDSFQ--IILDSM--------LQSYLDAERRKA-----AEGQE-------------DHDSTSAQ 209

  Fly   288 MPNLRTWFEHPIVMYRPTVQGASVPSEERFLPDDPRKLWAEGLYMDIPIMIGTVPNEGAVVSLAI 352
            ...:::.|                 .:|.||..           .||.      .::.:.|.::.
Mouse   210 RQEIQSDF-----------------MDETFLSS-----------CDIG------HHQESDVDMSC 240

  Fly   353 VHNETILEQFNENLKKLLVPVLAINGTDSVLEQLKGRYFPKATNNRWIKEDNANQFTKMMSDAFI 417
            ..|||  :.|::                       ...:.|.:.|...|  :..|...:.:|..:
Mouse   241 KTNET--QTFSD-----------------------FECYCKMSPNEQFK--HPEQEPTLETDKDV 278

  Fly   418 KYPTIKTLLQYVNSNQTSCRDTTLYSFEFEGRHSFSSLYIQS----NASHGVCHQ---DELLYLY 475
            |...::|....|:..|.|....|::..|.:..|...||:.|:    :|....|..   .|.:.:.
Mouse   279 KTEIVETTTMTVSIEQVSENSVTMHVEEEKELHENLSLHTQTLVEVDAKETCCDSGGGTEQVGIK 343

  Fly   476 RMIDLFPDFPPDSPETEMCNAWTEFLVNFASNETRPDSSRS 516
            .|..:.|:.|.::..:|..:..||:::     :..|.:|:|
Mouse   344 TMPVIEPNTPVNTNFSETDSTKTEYML-----DIEPVNSQS 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_733309.3 ATS1 1181..1587 CDD:444065
Rcbtb1NP_082040.2 ATS1 37..311 CDD:444065 70/356 (20%)
RCC1 1 40..91 10/26 (38%)
RCC1 2 93..145 17/70 (24%)
RCC1 3 147..198 16/67 (24%)
RCC1 4 199..250 14/99 (14%)
RCC1 5 252..302 10/51 (20%)
RCC1 6 304..356 11/51 (22%)
BTB_POZ_RCBTB1_CLLD7 350..466 CDD:349662 8/35 (23%)
BACK_RCBTB1 466..531 CDD:350603
Blue background indicates that the domain is not in the aligned region.

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