DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ca and als2a

DIOPT Version :10

Sequence 1:NP_733309.3 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:XP_021334529.1 Gene:als2a / 557014 ZFINID:ZDB-GENE-070402-2 Length:1662 Species:Danio rerio


Alignment Length:1015 Identity:205/1015 - (20%)
Similarity:328/1015 - (32%) Gaps:354/1015 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1175 VHAIKCGRQHTLILTNNG-LYSLGNNNLCQLGIGRHMQMALQP-----------MLVTALDGMNI 1227
            :|| ..|..|.|:|...| :||.|.                ||           :|.:.|.|.::
Zfish    43 LHA-ALGSLHGLLLIEGGQVYSFGE----------------QPWKPVEPPPASLVLESTLSGQHV 90

  Fly  1228 TMLEAGQYHNAAVA-DGKLYMWGWGIYGQLGQGSCENIATPQLVSFF-------KFKKILQISLG 1284
            ..:.||.||.:||. ||.:.|||...|||.|....:.:.:|..|:..       :..::|.::.|
Zfish    91 ISVSAGSYHCSAVTEDGLVLMWGENSYGQCGVSGTDRVPSPTPVTVVDDETHPPQLVRVLNVACG 155

  Fly  1285 HAHTLVL------------------------------------------CGA------------P 1295
            ..|||.|                                          |||            |
Zfish   156 AQHTLALSNKHEVWAWGSGCQLGLVTNVFPVWKPQKVEHLVGRYVVQIACGAFHSLALVQFLPSP 220

  Fly  1296 NSHMEA-NHCG--NEL----------FVFGSNHFGQLG-----------TGNSDHGDT---KTNL 1333
            ::..:| :.||  |::          .|....|:..||           :|.|....|   |.:.
Zfish   221 DASQQAQDKCGQCNQIRYTMTDKEDHVVISDEHYCPLGVELAESKEGRKSGQSSPAQTPQSKNSS 285

  Fly  1334 PVRLEVGDCSLRLIHTKFF--------TNLAVDEQDRLFTWGSSPQALRLANQIKRRANAKQKME 1390
            | ..:|..    |..|..|        ||........|...|  |..|       :|:.:....:
Zfish   286 P-NYQVSP----LTSTDTFSSSFQQNTTNQETQPDPSLSETG--PACL-------QRSKSTPYPD 336

  Fly  1391 ENQQRELLSKQLEATLLPAPIPSTSTLVEPTTSYAAVVAGSTP---KSSV-----SDTKDCQDVQ 1447
            |...::.|.|.|:           .||.|..||    ..||.|   :||:     |:..|...::
Zfish   337 EQALKDYLKKILD-----------QTLAEQATS----AGGSHPPSRQSSLTCPFGSEQSDELTLR 386

  Fly  1448 NEAAPSDATETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSE-------VAGRI-- 1503
            ..:.....|::|..::.|...     ||..|   .....:|:.|.|..||:       |.|.|  
Zfish   387 PSSPALSRTDSITSSARKHIS-----ASDTV---TEQKNQHIIPTLDSTSDDSSQHSSVDGGIYL 443

  Fly  1504 --LQISSG-LFHFC--------------------------------------------------- 1514
              |.||:| ||..|                                                   
Zfish   444 SDLVISNGCLFESCEEGGDTAGTDFCPADLLQSKKSISLTDVTLEDTDRNSFSPVSPSDTHRTSN 508

  Fly  1515 -------------LISSSCT-LYTWGKNLEHQLGTEDKDRRAVLKPSPIDSIERP--MYVDCGSD 1563
                         |:.|..| :::|||..|.|||..|...|  |:|..|.|:.:.  :.:..|::
Zfish   509 LRAVRASTSESRNLLPSLFTEVWSWGKGHEGQLGHGDYLPR--LQPLCIKSLSKKEVVKITAGAN 571

  Fly  1564 FTLVMTTDHVVRAFGGNSNGQCGRDLGPSV--------ERMRQRVVCLPATKRLVRFESQCVEVP 1620
            .:|.:|....|.::|....||.||...||.        :.:|...|....|..|:..:..|.: |
Zfish   572 HSLALTAQCQVYSWGSEKFGQLGRMNSPSTVPNLTTVSDGIRVWDVAAGQTHTLLLADGDCYQ-P 635

  Fly  1621 VEINLPRPRIRLDQDPVRYLKVMPPYQPHFLQPANISFDQHCSVGTPNYKSSTEHAATGQDSDDM 1685
            : :.....::..|.|. |.....|...|..:   ||.:......|..|..:..:..|.|     .
Zfish   636 I-LYYSGEQVLEDADS-RTCTQTPTLLPFCM---NIGYVNQVFGGGLNCLALADQNAMG-----F 690

  Fly  1686 LSSLENLSQNDASFSYN---------APVLGDAHSSLDMDYTPEEQSYVPLPEQAVGSGMPANAE 1741
            :|::..|:..:..|..:         :|:|..|..:|.:.    |.|.:...|.|   |..:...
Zfish   691 ISTIHELASAERKFYCSLSKLKNQILSPLLARASLALSLG----ESSMLLFQEMA---GSFSKLC 748

  Fly  1742 QLLGRDDDDGSTYTQSTEGMGESSLQHLRH-------YIHY--------CLYAFHGLYNPDKIGE 1791
            .|.|:.....:.:.|  :|....:|..::|       |..|        .:..|..|..|.:  |
Zfish   749 HLTGQHSVSLTNFLQ--QGKVIETLVLIKHTAIFMDTYKEYSGPVGNFLVMGGFQSLLKPSQ--E 809

  Fly  1792 CARPHRNEYRIRICMLNFRFVEAFRLCLQSCGSAQRTLKLFEYFSKDTGYVPLRRTDLKHLI-YH 1855
            |                  |.:...|......|.::...|::.. .:..|:|     |:||. |:
Zfish   810 C------------------FGKKLELIQALLESKEKNPSLYDLL-VNLFYMP-----LQHLNGYN 850

  Fly  1856 LCLHFLERKFDML--ECERFFMGDLDYYLL-----------ELAYVFYFNNNNSTLEQNLNQKFK 1907
            ..|..|...|::.  |.:|...|...|..|           |..:.|:.|.....||. |.:..:
Zfish   851 RLLLKLANCFEVNTDEYQRIQNGCSKYEALARLVSKQRKDAEATFHFWKNFKGKNLEA-LRKPSR 914

  Fly  1908 QLIAAADSNQAATSAGQELEQLQDTDVIFDSFTVKFKTIL 1947
            :|:..: ||:..|        ||:......|:.:.|..:|
Zfish   915 RLVCES-SNKGLT--------LQNAGRFSASWFILFNDVL 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_733309.3 ATS1 1181..1587 CDD:444065 124/601 (21%)
als2aXP_021334529.1 ATS1 <46..213 CDD:444065 39/182 (21%)
ATS1 530..>631 CDD:444065 28/102 (27%)
PH_alsin 907..1018 CDD:241423 11/49 (22%)
COG4642 <1055..1212 CDD:443680
VPS9 1559..1657 CDD:460489
Blue background indicates that the domain is not in the aligned region.

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