DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and nek8

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:XP_012812229.1 Gene:nek8 / 448753 XenbaseID:XB-GENE-990378 Length:698 Species:Xenopus tropicalis


Alignment Length:490 Identity:103/490 - (21%)
Similarity:158/490 - (32%) Gaps:179/490 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1120 ISAGCAYCACVV-DGTAYFWGS----SGIPSYYSAQKSTEPPEPAHAVKSLDLLSQLNLQVHAIK 1179
            :|||....|.|. .|....|.:    :|.|   |...|.|..:|....:.|:  .|..:.:..:.
 Frog   345 VSAGRTQKAGVTKSGRLIMWEATPVGTGAP---SLPGSIEHAQPQFISRFLE--GQSGVTIKHVS 404

  Fly  1180 CGRQHTLILTNNGL---YSLGNNNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHNAAVA 1241
            ||...|..||:.|:   :..|:|. | ||......:. ||.:|..|.|..|..:..|..|..||:
 Frog   405 CGDLFTACLTDRGIIMTFGSGSNG-C-LGHANFNDVT-QPKIVEDLLGYEIVHVSCGASHAIAVS 466

  Fly  1242 DGK-LYMWGWGIYGQLGQGSCENIATPQLVSFFKFKKILQISLGHAHTLVLCGAPNSHMEANHCG 1305
            :.| ::.||.|..|:||.||.|:..:||.|.         |...:....|:||..:|.:..  ..
 Frog   467 NEKEVFSWGRGDNGRLGLGSQESYNSPQQVI---------IPPEYEAQRVVCGIDSSMILT--VA 520

  Fly  1306 NELFVFGSNHFGQLGTGNSDHGDTKTNLPVRLEVGDCSLRLIHTKFFTNLAVDEQDRLFTWGSSP 1370
            |:|...|||.|.:||.                                       ||        
 Frog   521 NQLLACGSNRFNKLGF---------------------------------------DR-------- 538

  Fly  1371 QALRLANQIKRRANAKQKMEENQQRELLSKQLEATLLPAPIPSTSTLVEPTTSYAAVVAGSTPKS 1435
                                               :|.|..||:...||...::       ||..
 Frog   539 -----------------------------------ILSASEPSSEDQVEEAYTF-------TPIQ 561

  Fly  1436 SVSDTKDCQDVQNEAAPSDATETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVA 1500
            |                       ||.:.:|                                  
 Frog   562 S-----------------------APLNQEA---------------------------------- 569

  Fly  1501 GRILQISSGLFHFCLISSSCTLYTWGKNLEHQLGTE-DKDRRAVLKPSPIDSIERPMYVDCGSDF 1564
              ||....|..|..::::....||:|.|...||||. .::.|.....|.:..::..| |.||..:
 Frog   570 --ILCADVGTSHSAVVTALGQCYTFGSNQHGQLGTSAHRNSRVPCLVSALQGVKVTM-VACGDAY 631

  Fly  1565 TLVMTTDHVVRAFGGNSNGQCG-RDLGPSVERMRQ 1598
            |:.:..:..|..:|..:.|:.| ||.|..:.::.|
 Frog   632 TVAVGAEGQVFTWGKGARGRLGRRDEGIGIPKIVQ 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 87/435 (20%)
RCC1_2 1175..1200 CDD:290274 7/27 (26%)
RCC1 1193..1240 CDD:278826 13/49 (27%)
RCC1 1242..1291 CDD:278826 14/49 (29%)
RCC1_2 1503..1532 CDD:290274 8/28 (29%)
RCC1 1522..1568 CDD:278826 15/46 (33%)
RCC1_2 1558..1584 CDD:290274 6/25 (24%)
nek8XP_012812229.1 STKc_Nek8 3..258 CDD:270859
S_TKc 4..256 CDD:214567
ATS1 320..657 CDD:227511 100/479 (21%)
RCC1 421..465 CDD:278826 13/46 (28%)
RCC1 470..517 CDD:278826 17/55 (31%)
RCC1 587..635 CDD:278826 15/48 (31%)
RCC1 638..687 CDD:278826 8/29 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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