DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ca and Als2

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_001013431.1 Gene:Als2 / 363235 RGDID:1310372 Length:1651 Species:Rattus norvegicus


Alignment Length:575 Identity:121/575 - (21%)
Similarity:195/575 - (33%) Gaps:194/575 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1181 GRQHTLILTNNG-LYSLGN-------NNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHN 1237
            |.:|.::||.:| :||.|.       ..:|          ...|:|.:||.|.::..:..|.:|:
  Rat    49 GVKHGVLLTEDGEVYSFGTLPWKSEAAEIC----------PSSPLLESALVGHHVVTVATGSFHS 103

  Fly  1238 AAVAD-GKLYMWGWGIYGQLGQGSCENIATPQLVSFFKFK-------KILQISLGHAHTLVL--- 1291
            .||.: |.:||||....||....:.:.::.|..||....:       :|||::.|..|||.|   
  Rat   104 GAVTESGVVYMWGENAAGQCAVANQQYVSEPSPVSISDSETSPLLAVRILQLACGEEHTLALSIS 168

  Fly  1292 ---------------------------------------CGA----------PNSHME-----AN 1302
                                                   |||          |...::     .|
  Rat   169 REIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPPQDLKPVPERCN 233

  Fly  1303 HCGNELF---------VFGSNHFGQLGTGNSD-----HGDTKTN-LPVRLE---------VGDCS 1343
            .|...|.         :...:|...||...|:     |..|.|: .|..|:         |.:..
  Rat   234 QCSQLLITMTDKEDHVIISDSHCCPLGVTLSESQAEKHASTVTSPHPETLDGQGEVFENTVAEAE 298

  Fly  1344 LRLIHTKFFTNLAVDEQDRLF---------TWGSSPQALRLANQIKRRANAKQKMEENQQRELLS 1399
            |.:...:..:..|:..|..:.         |..|.|....:...:::.  ::..::||.:||...
  Rat   299 LNMGSDQTTSGSAISAQQNIVGMAEVSSARTAPSYPDTQTVTAYLQKL--SEHSVKENHEREEKL 361

  Fly  1400 KQLEATLLPA-------PIPSTSTLVEPTTSYAAVV---------AGSTPKSSVSD---TKDCQD 1445
            .|::..:..|       |..|||.|.....|.|:.|         ||:.....|.:   |..|: 
  Rat   362 PQVQPLVEEAVPDLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTAPCE- 425

  Fly  1446 VQNEAAPSDATETIAPASAKAAPPPVPVASPPVLVPEPDPTEHL----TPHLVDTSE-------- 1498
               ..||| .|.:..|.|.|.            |..|....|.|    :..|:|..|        
  Rat   426 ---PGAPS-GTASTGPESLKD------------LREEQVKQESLQGKKSSSLMDIREEESEGGSR 474

  Fly  1499 ---VAGRILQIS---------------------SGLFHFCLISSSCTLYTWGKNLEHQLGTEDKD 1539
               :.|.:.|:|                     ||.....|.|....::||||..|.|||..|..
  Rat   475 RLSLPGLLSQVSPRLLRKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVL 539

  Fly  1540 RRAVLKPSPIDSIE--RPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQCGRDLGPS 1592
            .|  |:|..:..::  ..::::.|...:|.:|....|.::|.|:.||.|....|:
  Rat   540 PR--LQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSEFPT 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 120/569 (21%)
RCC1_2 1175..1200 CDD:290274 8/26 (31%)
RCC1 1193..1240 CDD:278826 11/53 (21%)
RCC1 1242..1291 CDD:278826 17/56 (30%)
RCC1_2 1503..1532 CDD:290274 11/49 (22%)
RCC1 1522..1568 CDD:278826 14/47 (30%)
RCC1_2 1558..1584 CDD:290274 6/25 (24%)
Als2NP_001013431.1 RCC1 1 59..108 14/58 (24%)
RCC1_2 93..122 CDD:290274 9/28 (32%)
RCC1 2 109..167 18/57 (32%)
RCC1 109..165 CDD:278826 17/55 (31%)
RCC1 3 169..218 3/48 (6%)
RCC1 170..216 CDD:278826 3/45 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 444..476 6/31 (19%)
RCC1 4 519..570 14/52 (27%)
RCC1 521..568 CDD:278826 14/48 (29%)
RCC1 5 572..621 7/21 (33%)
RCC1 573..619 CDD:278826 7/20 (35%)
RhoGEF 689..873 CDD:295373
PH_alsin 899..1004 CDD:241423
PH 920..998 CDD:278594
COG4642 1043..1182 CDD:226989
MORN 1 1043..1065
MORN 1043..1063 CDD:280628
MORN 2 1066..1088
MORN 3 1094..1116
MORN 1094..1114 CDD:280628
MORN 4 1117..1139
MORN 5 1145..1167
COG4642 1166..>1266 CDD:226989
MORN 6 1169..1191
MORN 7 1192..1214
MORN 8 1215..1238
VPS9 1548..1647 CDD:280383
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337073
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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