Protein Alignment ca and Herc3

DIOPT Version :9

• Sequence 1: NP_001287593.1
• Gene: ca / 43518
• FlyBaseID: FBgn0000247
• Length: 1961
• Species: Drosophila melanogaster
• Sequence 2: NP_001102101.1
• Gene: Herc3 / 362377
• RGDID: 1307803
• Length: 1050
• Species: Rattus norvegicus
• Alignment Length: 499
• Identity: 101/499 - (20%)
• Similarity: 161/499 - (32%)
• Gaps: 213/499 - (42%)

  Fly  1137 FW--GSSGIPSYYSAQKSTEPPEPAHAVKSLDLLSQLNLQVHAIKCGRQHTLILTNNG-LYSLGN 1198
            :|  |..||.|  :.|.....|:....|.        :..:..:.||..|::.|..:| :|:.|.
  Rat     6 YWSLGQPGISS--NLQGIVAEPQVCRFVS--------DRSIKEVACGGNHSVFLLEDGEVYTCGV 60

  Fly  1199 NNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHNAAVAD-GKLYMWGWGIYGQLGQGSCE 1262
            |...|||   |.:...:|..:.||...:|..:..|:.|:.|::| |:|:.||.|..||||..:.|
  Rat    61 NTKGQLG---HEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTE 122

  Fly  1263 -NIATPQLVSFFKFKKILQISLGHAHTLVLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDH 1326
             ::|.|:|:.....:.|||:|.|:.|.|.|.           ...:.|.:|.|..||||.|..
  Rat   123 DSVAVPRLIQKLNQQTILQVSCGNWHCLALA-----------ADGQFFTWGKNSHGQLGLGKE-- 174

  Fly  1327 GDTKTNLPVRLEVGDCSLRLIHTKFFTNLAVDEQDRLFTWGSSPQALRLANQIKRRANAKQKMEE 1391
                                                 |...:|||.:|
  Rat   175 -------------------------------------FPSQTSPQRVR----------------- 185

  Fly  1392 NQQRELLSKQLEATLLPAPIPSTSTLVEPTTSYAAVVAGSTPKSSVSDTKDCQDVQNEAAPSDAT 1456
                     .||.
  Rat   186 ---------SLEG---------------------------------------------------- 189

  Fly  1457 ETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRILQISSGLFHFCLISSSCT 1521
                          :|:|                              |:::|..|...:|.|..
  Rat   190 --------------IPLA------------------------------QVAAGGAHSFALSLSGA 210

  Fly  1522 LYTWGKNLEHQLG-TEDKDRRAVLKPSPIDSI--ERPMYVDCGSDFTLVMTTDHVVRAFGGNSNG 1583
            ::.||.|...||| :::|||.:   |..:..:  ::.:|:.||.:.|.|:|....|..||..|.|
  Rat   211 VFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCG 272

  Fly  1584 QCGRD--------------LGPSVERM---RQRVVCLPATKRLV 1610
            |.|.|              :|..|.::   ||..:.|..:..|:
  Rat   273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLI 316

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ca	NP_001287593.1	ATS1	1158..1588	CDD:227511	87/435 (20%)
		RCC1_2	1175..1200	CDD:290274	7/25 (28%)
		RCC1	1193..1240	CDD:278826	13/46 (28%)
		RCC1	1242..1291	CDD:278826	21/50 (42%)
		RCC1_2	1503..1532	CDD:290274	8/28 (29%)
		RCC1	1522..1568	CDD:278826	14/48 (29%)
		RCC1_2	1558..1584	CDD:290274	9/25 (36%)
Herc3	NP_001102101.1	ATS1	2..331	CDD:227511	101/499 (20%)
		RCC1	313..377	CDD:395335	1/4 (25%)
		HECTc	702..1048	CDD:238033

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010