DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and Rccd1

DIOPT Version :10

Sequence 1:NP_733309.3 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_001419183.1 Gene:Rccd1 / 308760 RGDID:1309901 Length:378 Species:Rattus norvegicus


Alignment Length:315 Identity:72/315 - (22%)
Similarity:112/315 - (35%) Gaps:106/315 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1120 ISAGCAYCA---------------CVVDGTAYFWGSSG--------------------------- 1142
            :||..:|.|               |..||....|.|.|                           
  Rat    45 VSASWSYTALVTRGGRVELSGSVSCAADGCRDVWASEGLLVVQRNKSGSGTELQAWVPGSALQGE 109

  Fly  1143 ------IPSYYSAQKSTEP-PEPAHAVKSLDLLS----------------QLNLQVHAIKCGRQH 1184
                  :.|...||...|| .||  .:.:|.||.                ...|:|..::.|.:|
  Rat   110 PLWVQNLASGAKAQGEDEPGSEP--RMGTLPLLPCARAYMTPQPPFCQPLAPELRVRQLQLGAEH 172

  Fly  1185 TLILTNNG-LYSLGNNNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHNAAVAD-GKLYM 1247
            .|:|...| ::|.|.....|||.| .::..|:|.|:.||.|:.:..:.||.:|:..|:: |.:|:
  Rat   173 ALLLCEAGQVFSWGGGRHGQLGHG-SLEAELEPRLLEALQGLRMAEVAAGGWHSVCVSETGDIYI 236

  Fly  1248 WGWGIYGQLG---------------------------QGSCENIATP-QLVSFFKFKKILQISLG 1284
            |||...|||.                           :.:..::..| ..::...|..:|.:.||
  Rat   237 WGWNESGQLALPTRSGTEKKTVREEATELNDDGLRGEEAALADVGAPAHFIAIQPFPALLDLPLG 301

  Fly  1285 HAHTLVLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDHGD-TKTNLPVRLE 1338
            .......||  :.|........||:.:|...:||||     |.| |.::.|.|:|
  Rat   302 SDAVKASCG--SRHTAVVTRTGELYTWGWGKYGQLG-----HKDSTSSDQPCRVE 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_733309.3 ATS1 1181..1587 CDD:444065 50/189 (26%)
Rccd1NP_001419183.1 ATS1 <163..370 CDD:444065 51/195 (26%)

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