DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ca and glo-4

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_505392.3 Gene:glo-4 / 179306 WormBaseID:WBGene00017195 Length:1386 Species:Caenorhabditis elegans


Alignment Length:1564 Identity:311/1564 - (19%)
Similarity:515/1564 - (32%) Gaps:592/1564 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   474 STMGSFAIMDSPSVTPEPLGTTSGSFYNIQNLRSTFLLSALHSNSHSLTVHSIDISLKPLFVYKI 538
            :||..|| .||..|.  .|.||. |...:.|                 |.||:..|.|..|  |:
 Worm   287 ATMQFFA-ADSCGVV--ALDTTE-SIVEVYN-----------------TFHSLAHSSKRTF--KV 328

  Fly   539 PKHTQEILISSNILYGIHYVDLHCRSDSDHF-------------TAASLLDDPLVANTEKENRDA 590
            |..|..:....|:|:.:.. |...|| :.||             |:.:.....:||...:.::.|
 Worm   329 PPETWMVHAGDNMLFTVSN-DNEIRS-ALHFGFMSSRLEYTLVRTSTNWRPLGIVAMPSRPHKLA 391

  Fly   591 DIEKVDQSDVSAQKSDSTSATTTATSSLDQSDMPSTAINAVSVISSAMASLHTSDEDRFNNLAQL 655
            .|..|::..: .:...||:...|..:|.....:....:|:.||...|             |..::
 Worm   392 GIFVVNERGL-VRVEQSTALNLTKIASEFFFRLSPLQLNSKSVAQVA-------------NACRI 442

  Fly   656 GLFRFENETVLHLYQMAQYRNPSAEPETLTKEEKAKAFEL-KDIHTPM-DYIQFYETADVSSEFS 718
            ....|::..:.:|....:.|.       ||.:|.::.:.: |.|:..| |.::.:|...:..:..
 Worm   443 DTAEFQSALIPNLLSTRKNRQ-------LTNKELSQIYSIAKAINLSMSDLLKAFENESIGEQLL 500

  Fly   719 LRQMEIMQSEFPKINYDPSYVITNKNVYTIQLKKEPFELFLDAALQNEFNQCRDFCNTFDLSFEQ 783
            ...:..:|:...|  :|             .|.:...|:|:..:|..|.|.  |....:|...  
 Worm   501 PEVLNTIQTNPAK--HD-------------NLMQRVVEMFVKRSLSAEGNM--DKIREYDAEL-- 546

  Fly   784 CIEFAGDYLLRRKKITQALLTYNKARVKPIRTALKLAMYGHTYALMQLSAMALKSTYLLRSRYLG 848
                 .::|.|.:.:.:..:...||           .|:..|..|::                  
 Worm   547 -----SNFLARHEHLHKGSVDCAKA-----------GMWKCTQTLVR------------------ 577

  Fly   849 HPLLKGILGDITYRHSEDVRVILPEKHEEEDVNSGVFCSDYHYGVDESISALQMSPSSQFHLANL 913
                            .||       ||.:             .:|.|...|            |
 Worm   578 ----------------RDV-------HETK-------------SIDTSTEVL------------L 594

  Fly   914 LLITLAEKAVNDKNYIPLWNFLVTNSKYHTNMTSIVLCQSGLFSSAIILAKIRGVCLDTFNALIS 978
            .:|         ||.:.:||  ..||.....:.|:| |.  |..|.:..|....||     |::|
 Worm   595 YII---------KNRLQIWN--EANSTDRLQIMSLV-CH--LDWSKLADADGARVC-----AILS 640

  Fly   979 VVAQEFGWYNELNVCLYNLSENIFLETITYLPHVSMDYFAFIQEKLHHIRPCVLQRLSKQLNPFS 1043
                  .|..::::..|:       |....:...:.|.|.         |||.:..|...::..|
 Worm   641 ------AWQRDISLPSYH-------EMCLRIAITNSDRFP---------RPCQILSLVSSIHILS 683

  Fly  1044 ----------PALRPIVSHNSDCAMSNDNNPQL-----FEFCKSLIETYLAVLIHMESQRVKYDS 1093
                      |...|:...| :|..:...:.:|     |...:..:|     :..|.::..:.||
 Worm   684 EKKISNHANLPNFLPLAGGN-NCGATITEDDRLMIWGNFTNAQQRME-----MPQMNAKSKRSDS 742

  Fly  1094 IVNALSNFRINYEDNQFAIESSRFKPISAGCAYCACVVDGTAYFWGSSGIPSYYSAQKSTEPPEP 1158
            :.|                                          |:..:|          ||.|
 Worm   743 VTN------------------------------------------GAPTLP----------PPAP 755

  Fly  1159 AHAVKSLDLLSQLNLQVHAIKCGRQHTLILTNNG-LYSLGNNNLCQLGIGRHMQMALQPMLVTAL 1222
            ........:|.....:..||.||.:|.|:|:::| |.:.|.|...|.|:|...::|    .:..:
 Worm   756 KPEQHLPRVLEYPGGRPRAIACGAEHILVLSSSGQLSAWGGNRFGQCGVGHSFRIA----NLHQV 816

  Fly  1223 DG--MNITMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQGSCENIATPQLVSF---FKFKKILQI 1281
            ||  ..|..:..||:|:|.: :||.|:.:|||::||||.|...|  :.|||..   ....|:.||
 Worm   817 DGDWPAIEKIACGQFHSAFICSDGSLWTFGWGVWGQLGHGGRNN--SNQLVPTRVNGLICKVTQI 879

  Fly  1282 SLGHAHTLVLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDHGDTK-----TNLPVRLEVGD 1341
            :.|.|||:||...           ..:.|.||..:||:|..:    |.|     |.||    :|.
 Worm   880 ACGRAHTVVLTDT-----------GRVLVCGSGSYGQMGVDD----DIKKVFAFTPLP----LGP 925

  Fly  1342 CSLRLIHTKFFTNLAVDEQDRLFTWGSSPQALRLANQIKRRANAKQKMEENQQRELLSKQLEATL 1406
            ..:|.|.|.::.::.:.|.:|:|.||.:||.|              ||.....:::.|.||:.|.
 Worm   926 LRVRDIATHYYHSICITEDNRVFEWGRNPQEL--------------KMRMFVMKKIRSAQLKNTE 976

  Fly  1407 LP-APIPSTSTLVEPTTSYAAVVAGSTPKSSVSDTKDCQDVQNEAAPSDATETIAPASAKAAPPP 1470
            .| :|.|||:              ||||:.::                                 
 Worm   977 DPSSPSPSTN--------------GSTPRVNL--------------------------------- 994

  Fly  1471 VPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRILQISSGLFHFCLISSSCTLYTWGKNLEHQLGT 1535
                :.|..:|..|.......|.:|     |.|:.::.||.|..||:|..|||||||.|::|||.
 Worm   995 ----NLPAEIPREDLGLREVKHFLD-----GNIVSVACGLSHSALITSEGTLYTWGKGLDYQLGH 1050

  Fly  1536 EDKDRR----AVLKPSPIDSIERPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQCG---RDLGPSV 1593
            .:|:.|    .|.:|:....:.    |..|::.|:..|.|..|.|:|.|..||||   :..|.|.
 Worm  1051 GNKNERMEPHQVFEPNGAKWVN----VSLGNNHTIASTDDGSVFAWGKNDFGQCGVLTKKNGNSA 1111

  Fly  1594 ERMRQRVVCLPATKRLV-------RF-----ESQCVEVPVEINLPRPRIRLDQDPVRYLKVMPPY 1646
            :          .||:..       ||     |||.|:.|..|  |..|:|               
 Worm  1112 D----------VTKKFFFQARDGRRFMPNVDESQFVQKPGLI--PDVRVR--------------- 1149

  Fly  1647 QPHFLQPANISFDQHCSVGTPNYKSSTEHAATGQDSDDMLSSLE----NLSQNDASFSYNAPVLG 1707
                    |::                |....|.|.::::..|:    |:.|..:...| :|:.|
 Worm  1150 --------NLN----------------EDGNEGVDKEEIVDRLKASDVNVVQAVSKHLY-SPIEG 1189

  Fly  1708 DAHSSLDMDYTPEEQSYVPLPEQAVGSGMPANAEQLLGRDDDDGSTYTQSTEGMGESSLQHLRHY 1772
            ..:.|:..|            |...|.....|.     .|.:||...|       .::|.||   
 Worm  1190 KCNGSIIED------------EPRNGKIQKQNK-----YDGEDGPLCT-------TTALVHL--- 1227

  Fly  1773 IHYCLYAFHGLYNPDKIGECARPHRNEYRIRICMLNFRFVEAFRLCLQSCGSAQRTLKLFEYFSK 1837
                                                            ..|..:|.:::.|:.  
 Worm  1228 ------------------------------------------------IAGDVKRAIRMIEWL-- 1242

  Fly  1838 DTGYVPLRRTDLKHLIYHLCLHFLERKFDMLECERFFMGDLDYYLLELAYVFYFNNNNSTLEQNL 1902
                                      |.|...||:..|     .|..|.:....|:.:....:.|
 Worm  1243 --------------------------KTDSSTCEKSLM-----VLSSLVWEVMANHEDVQSREAL 1276

  Fly  1903 NQKFKQLIAAADSNQAATSAGQELEQL----------------QDTDVIFDSFTVKFKTILCQRL 1951
            :..|:. :..:||.:    .|:::.||                .:...:.|.||...|.:.|..:
 Worm  1277 SAAFRH-VPMSDSMR----KGKQIAQLWPAVWNDERVQSSLSIDEKIAMLDGFTSASKPVSCPTI 1336

  Fly  1952 LSYS 1955
            .|.|
 Worm  1337 PSSS 1340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 127/449 (28%)
RCC1_2 1175..1200 CDD:290274 10/25 (40%)
RCC1 1193..1240 CDD:278826 14/48 (29%)
RCC1 1242..1291 CDD:278826 22/51 (43%)
RCC1_2 1503..1532 CDD:290274 15/28 (54%)
RCC1 1522..1568 CDD:278826 17/49 (35%)
RCC1_2 1558..1584 CDD:290274 9/25 (36%)
glo-4NP_505392.3 RCC1_2 773..801 CDD:290274 11/27 (41%)
RCC1_2 823..852 CDD:290274 11/28 (39%)
RCC1 839..889 CDD:278826 22/51 (43%)
RCC1_2 876..905 CDD:290274 11/39 (28%)
RCC1 893..941 CDD:278826 15/55 (27%)
RCC1_2 1018..1047 CDD:290274 15/28 (54%)
RCC1 1034..1082 CDD:278826 18/51 (35%)
RCC1_2 1070..1099 CDD:290274 9/32 (28%)
VAD1-2 1303..>1371 CDD:291956 7/38 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto19434
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5530
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.900

Return to query results.
Submit another query.