DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and Rcbtb2

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:NP_001164165.1 Gene:Rcbtb2 / 105670 MGIID:1917200 Length:551 Species:Mus musculus


Alignment Length:277 Identity:76/277 - (27%)
Similarity:124/277 - (44%) Gaps:39/277 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1107 DNQFAIESSRFKPIS----AGCAY------CACVVDGTAYFWGSSGIPSYYSAQKSTEPPEPAHA 1161
            |.|..||..|...::    |..:|      .....||..:.||.:.. |......:.....|.|.
Mouse    82 DIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWGHNAY-SQLGNGTTNHGLVPCHI 145

  Fly  1162 VKSLDLLSQLNLQVHAIKCGRQHTLILTNNG-LYSLGNNNLCQLGIGRHMQMALQPMLVTALDGM 1225
            ..:|.     |.||..:.||..|:|:||::| :::.|.||..|:|.|......:...:...|...
Mouse   146 STNLS-----NKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNK 205

  Fly  1226 NITMLEAGQYHNAAVAD-GKLYMWGWGIYGQLGQGSCENIATPQLVSFFKFKKILQISLGHAHTL 1289
            .:..:..||..:.||.| |::|:||:...||||.||..|..||..|:..:..::.:::.|:||||
Mouse   206 VVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTL 270

  Fly  1290 VLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNSDHGDTKTNLPVR----LEVGDCSLRLIHTK 1350
            ||...           .:::.:|:|.:|||||||..:....|.:.|.    :|:..|     |:.
Mouse   271 VLTDE-----------GQIYAWGANSYGQLGTGNKSNQSYPTPVVVEKDRIIEIAAC-----HSA 319

  Fly  1351 FFTNLAVDEQDRLFTWG 1367
             .|:.|..:...::.||
Mouse   320 -HTSAAKTQGGHVYMWG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 64/216 (30%)
RCC1_2 1175..1200 CDD:290274 9/25 (36%)
RCC1 1193..1240 CDD:278826 9/46 (20%)
RCC1 1242..1291 CDD:278826 20/49 (41%)
RCC1_2 1503..1532 CDD:290274
RCC1 1522..1568 CDD:278826
RCC1_2 1558..1584 CDD:290274
Rcbtb2NP_001164165.1 RCC1 1. /evidence=ECO:0000255 64..115 7/32 (22%)
ATS1 <107..335 CDD:227511 67/250 (27%)
RCC1 2. /evidence=ECO:0000255 117..169 16/57 (28%)
RCC1 3. /evidence=ECO:0000255 171..222 12/50 (24%)
RCC1 4. /evidence=ECO:0000255 223..274 21/50 (42%)
RCC1 5. /evidence=ECO:0000255 276..326 16/55 (29%)
RCC1 6. /evidence=ECO:0000255 328..382 2/8 (25%)
BTB_POZ_RCBTB2_CHC1L 374..490 CDD:349663
BACK_RCBTB2 487..551 CDD:350604
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833502
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.800

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