DRSC/TRiP Functional Genomics Resources

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Protein Alignment ca and herc6

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:XP_031759089.1 Gene:herc6 / 100487734 XenbaseID:XB-GENE-968556 Length:1030 Species:Xenopus tropicalis


Alignment Length:744 Identity:147/744 - (19%)
Similarity:234/744 - (31%) Gaps:321/744 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly  1136 YFWGSS--GIPSYYSAQKSTEPPEPAHAVKSLDLLSQLNLQVHAIKCGRQHTLILTNNG-LYSLG 1197
            |.||.:  |..:....:|     |..|..::....||..:|  .:.||.:|||.|..:| |.|.|
 Frog     2 YCWGDNCFGQLALLQGEK-----EVVHFKENDYFQSQECVQ--KVSCGEKHTLYLLEDGTLLSCG 59

  Fly  1198 NNNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHNAAVAD-GKLYMWGWGIYGQLGQG-- 1259
            .|...|||...:.....|   :::|:...|..:..|..|:.||:| |.:|.||.|..||||.|  
 Frog    60 QNPYGQLGRKSNNSSIEQ---ISSLEAQTIVDISCGTNHSVAVSDEGSIYSWGDGSEGQLGTGNL 121

  Fly  1260 SCENIATPQLVSFFKFKKILQISLGHAHTLVLCGAPNSHMEANHCGNELFVFGSNHFGQLGTGNS 1324
            |..|....::...|. .||:|||                     |||                  
 Frog   122 SSRNFTPKKITGLFN-TKIIQIS---------------------CGN------------------ 146

  Fly  1325 DHGDTKTNLPVRLEVGDCSLRLIHTKFFTNLAVDEQDRLFTWGSSP-QALRLANQIKRRANAKQK 1388
                                       |.:||:.|..|:|:||.:. ..|.|.:||..:|     
 Frog   147 ---------------------------FHSLALSEDGRVFSWGQNKCGQLGLGSQIINQA----- 179

  Fly  1389 MEENQQRELLSKQLEATLLPAPIPSTSTLVEPTTSYAAVVAGSTPKSSVSDTKDCQDVQNEAAPS 1453
                                     |..||:                                  
 Frog   180 -------------------------TPQLVK---------------------------------- 185

  Fly  1454 DATETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRILQISSGLFHFCLISS 1518
                     |.|..|                                  ::|:::|......:|.
 Frog   186 ---------SLKGIP----------------------------------LVQVTAGGSQSFALSM 207

  Fly  1519 SCTLYTWGKNLEHQLG-TEDKDRRAVLKPSPIDSIER--PMYVDCGSDFTLVMTTDHVVRAFGGN 1580
            |.|::.||||...||| ..|..:....||..::|:..  ..|:.||.:.|.|::.|..|..||.:
 Frog   208 SGTVFAWGKNNAGQLGFKSDPMKAGTFKPHAVNSLRNLGVAYISCGEEHTAVLSKDGSVYTFGDD 272

  Fly  1581 SNGQCGRDLG--PSVERMRQ-------RVVC--------LPATKRLVRF---------ESQC--- 1616
            ::||.|::.|  .||.:..:       :|.|        :.:..|:|.|         .::|   
 Frog   273 THGQLGQNSGNQTSVPQKIEDYAGQVSQVACGRYHTLLYVFSCNRIVSFGKGSLRPQDNTECSDE 337

  Fly  1617 VEVPVEINLP-------------------------------------------RPRIRLDQDPV- 1637
            .|:|.|.::.                                           :|.:|||...: 
 Frog   338 AELPSEFDISSLVPTNDLRDVYVKWIFAGNNVGFAVPFSQQEATKRTLLSDTFKPILRLDLPTIK 402

  Fly  1638 RYLKVMPPYQPH----------FLQPANISFDQHC-SVGTPNYKSSTEHAATGQDSDDMLSSLEN 1691
            :::|.....:.:          |..||       | :.|..|..||...:|         ||:.:
 Frog   403 KWMKAQTGSEEYQIAKREICTIFSSPA-------CFTAGFVNRSSSNTSSA---------SSIVD 451

  Fly  1692 LSQNDASFSYNAPVLGDAH------SSLDMDYTPEEQS----------YVPLPEQAVGSGMPANA 1740
            |......|:   .::.|..      ||:..|..||.:|          ::.|||..:...:....
 Frog   452 LGVASKLFT---ELIKDRRISDIICSSIRNDLIPELESLPLLYEAFAIFLLLPECPLLHDLSICL 513

  Fly  1741 EQLLGRDDDDGSTYTQSTEGMGESSLQHL 1769
            ..::        ...::...||||||:.|
 Frog   514 SVVV--------ALAKAINNMGESSLKIL 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 94/437 (22%)
RCC1_2 1175..1200 CDD:290274 10/25 (40%)
RCC1 1193..1240 CDD:278826 12/46 (26%)
RCC1 1242..1291 CDD:278826 19/51 (37%)
RCC1_2 1503..1532 CDD:290274 9/28 (32%)
RCC1 1522..1568 CDD:278826 15/48 (31%)
RCC1_2 1558..1584 CDD:290274 8/25 (32%)
herc6XP_031759089.1 ATS1 2..373 CDD:227511 112/554 (20%)
HUL4 324..1021 CDD:227354 39/238 (16%)
HECTc 684..1028 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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