DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ca and nek9

DIOPT Version :9

Sequence 1:NP_001287593.1 Gene:ca / 43518 FlyBaseID:FBgn0000247 Length:1961 Species:Drosophila melanogaster
Sequence 2:XP_021323186.1 Gene:nek9 / 100334361 -ID:- Length:921 Species:Danio rerio


Alignment Length:1005 Identity:198/1005 - (19%)
Similarity:317/1005 - (31%) Gaps:319/1005 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   845 RYLGHPLLKGILGDIT-YRHSEDVRVI---------LPEKHEEEDVNSGVFCSDYHYGVDESISA 899
            |.||    ||..|:.| ||.:||..::         |.:|...:.:|.....|..|:   .:|.|
Zfish    45 RVLG----KGAFGEATLYRRTEDNSLVVWKEIDLNCLSDKKRRDVMNEISILSILHH---NNIIA 102

  Fly   900 LQMSPSSQFHLANLLLITL-------------AEKAVNDKNYIPLWN-FLVTNSKYHTNMTSIVL 950
            .    .:.|...|.|||.|             .:|....|..:.:|. :.:..:..|.:...|: 
Zfish   103 Y----FNHFLDKNTLLIELEYCNGGNLYDKINQQKGALFKEEVVVWYLYQIAAAVAHIHKAGIL- 162

  Fly   951 CQSGLFSSAIILAKIRGVCLDTFNALISVVAQEFGWYNELNVCL---YNLSENIFLETITYLPHV 1012
             ...:.:..|.|.|...:.|..:.....:.:|    |:....|:   |.:|..: .:.:.|  :.
Zfish   163 -HRDIKTLNIFLTKTNLIKLGDYGLAKKLDSQ----YSMAETCVGTPYYMSPEL-CQGVKY--NF 219

  Fly  1013 SMDYFAFIQEKLHHIRPCV------LQRLSKQLNPFSPALRPIVSHNSDCAMSNDNNPQLFEFCK 1071
            ..|.:|.         .||      |.|.....||.:..:: ||..|....:::|      .:..
Zfish   220 KSDIWAM---------GCVLFELLTLTRTFDATNPLNLCVK-IVQGNWTMEINSD------VYTS 268

  Fly  1072 SLIETYLAVLIHMESQRVKYDSIVN--ALSNFRINYEDNQFAIESSRFKPISAGCAYCACVVDGT 1134
            .||:.....|.....:|...:.|:.  .:|:.|:..|:...|:.|:..||..:.....:..|..|
Zfish   269 ELIKLVYECLDQDPEKRPTAEQILEQPVISHVRVELEERVAALNSAIRKPKLSTVTETSVAVVTT 333

  Fly  1135 ----AYFWGSSGIPSYYSAQKSTEPPEPAHAVKSLDLLSQLNLQVHAIKCGRQHTLILT-NNGLY 1194
                .||||.    ..::.||             ||:....:...| :..|..|..::| ...||
Zfish   334 RSREVYFWGG----GKFTPQK-------------LDMFKGGSSAQH-VCAGETHFAVVTVEKELY 380

  Fly  1195 SL-----GNNNLCQLGIGRHMQMALQPMLVTALDGMNITMLEAGQYHNAAVAD-GKLYMWGWGIY 1253
            :.     |...:.|||.|...... ||..|..|.|..|..:..|....|.|.| .::||:|...|
Zfish   381 TWASVQGGAKMVGQLGHGDQASYR-QPRRVERLQGKAIRQVSXGADFTACVTDEDQIYMFGSDYY 444

  Fly  1254 GQLGQGSCEN-----IATPQLVSFFKFKKILQISLGHAHTLVLCGAPNSHMEANHCGNELFVFGS 1313
            |.:|   .||     :..|.|:.||..:.:.|:|.|..|.|.|..:           .||:.:|.
Zfish   445 GCVG---VENELGMEVLEPVLLEFFTERAVRQVSCGDNHVLALTQS-----------RELYAWGC 495

  Fly  1314 NHFGQLGTGNSDHGDTKTNLPVRLEVGDCSLRLIHTKFFTNLAVDE----QDRLFTWGSSPQALR 1374
            ...|:||....|...:    |:::||..            ...:|.    .|..|....|.:.|.
Zfish   496 GEHGRLGLDCEDDFSS----PMQVEVPQ------------GAVIDSVYCGSDGTFFLTESGKVLA 544

  Fly  1375 LANQIKRRANAKQKMEENQQRELLSKQLEATLLPAPIPSTSTLVEPTTSYAAVVAGSTPKSSVSD 1439
            ..|      |...|:..||....:...........|..:|.|||:..:.:               
Zfish   545 CGN------NEFNKLGLNQGITGIKNHPGEGYQGIPYTTTLTLVKLLSRF--------------- 588

  Fly  1440 TKDCQDVQNEAAPSDATETIAPASAKAAPPPVPVASPPVLVPEPDPTEHLTPHLVDTSEVAGRIL 1504
                                                                          :|.
Zfish   589 --------------------------------------------------------------KIQ 591

  Fly  1505 QISSGLFHFCLISSSCTLYTWGKNLEHQLGTED--KDRRAVLKPSPIDSIERPMYVDCGSDFTLV 1567
            .::.|..|...|.....|.|:|.|...|||.:|  |.:...:...|... :....|.||..||:.
Zfish   592 FLAPGKTHTAAIDERGRLMTFGCNKFGQLGVKDFKKHQGVQILVGPFGG-KIVTKVSCGDGFTIA 655

  Fly  1568 MTTDHVVRAFGGNSNGQCGRDLGPSVERMRQRVVCLPATKRLVRFESQ-CVEVPVEI-----NLP 1626
            .|.|:.:.|:|...||:.|                :||.|   .|.|: |..:|..|     ::|
Zfish   656 ATEDNQIFAWGNAGNGRLG----------------MPADK---GFGSEVCPALPRPIFGSLHHVP 701

  Fly  1627 RPRIR-----------LDQDPVRYLKVMPPYQPHFLQPANISFDQHCSVGTPNYKSSTEHAATGQ 1680
            ....|           |:...:|                  |.....|:|:....:|:....|..
Zfish   702 DLSCRGWHTILIMEKVLNSKTIR------------------SNSSGLSIGSGQCSTSSVDLETAS 748

  Fly  1681 DSDD-----MLSSLENLSQNDASFSYNAPVLGDAHSSLDMDYTPEEQS-------------YVPL 1727
            .:|.     ||........:|...  ..|:       ..||....|.|             |:|:
Zfish   749 ATDSELREGMLGGTVEAVMDDRGL--ETPL-------FSMDSKTNESSCPSWLRKELQDAEYIPM 804

  Fly  1728 PEQAVGSGMPANAEQLLGRDDDDGSTYTQS 1757
            |:.:..|..|..            |:||:|
Zfish   805 PDDSRESMEPLT------------SSYTES 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caNP_001287593.1 ATS1 1158..1588 CDD:227511 92/447 (21%)
RCC1_2 1175..1200 CDD:290274 7/30 (23%)
RCC1 1193..1240 CDD:278826 15/51 (29%)
RCC1 1242..1291 CDD:278826 18/54 (33%)
RCC1_2 1503..1532 CDD:290274 8/28 (29%)
RCC1 1522..1568 CDD:278826 15/47 (32%)
RCC1_2 1558..1584 CDD:290274 10/25 (40%)
nek9XP_021323186.1 STKc_Nek9 40..297 CDD:270860 56/287 (20%)
RCC1 <347..657 CDD:332518 87/438 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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