DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncd and kifc3

DIOPT Version :9

Sequence 1:NP_001287592.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_012816498.1 Gene:kifc3 / 548839 XenbaseID:XB-GENE-980351 Length:924 Species:Xenopus tropicalis


Alignment Length:508 Identity:173/508 - (34%)
Similarity:250/508 - (49%) Gaps:73/508 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 LEKHKVLKTKYEKQTEDMGELESMPQQLEETQNKLIETESSLKNTQSDNECLQRQVKQHTAKIET 267
            :||.:.:...:|:..|   |:.::.|.|:..:..|:..:.:|:....|...|:|||:...|   .
 Frog   444 VEKEQAVAEAFERAQE---EMRAVHQSLDGVRKNLLTLQPALRTLTHDYNALKRQVRDFPA---L 502

  Fly   268 ITSTLGRTKEELSELQAIHEKVKTEHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 332
            :...:|..:.|.|:                 .|.|:.....|||   .:...||..         
 Frog   503 LNEAIGEARIEFSQ-----------------AVKHVSDTNAELL---HKYRKELHL--------- 538

  Fly   333 MERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHD------ESTVELQSID------A 385
              |||.||.::.|||||||..|:||            .|..|      |:.|.....|      |
 Frog   539 --RKECHNQLVRLRGNIRVLTRVRP------------ITTEDGVGPGAENVVNFDPDDDGVLYVA 589

  Fly   386 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 450
            |...:|.   |..|:||.|.::|.::|..|||||.|.||||::||.|||||||||||:|:|:|..
 Frog   590 QKGKEMS---FELDKVFKPSATQEEVFREVSPLITSCLDGYSVCILAYGQTGSGKTYSMEGIPSD 651

  Fly   451 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL-SNEQKDMEIRMAKNNKNDIYV 514
            .|:..|.:.||...:: .|:..||:|:..:.:|||||.|.||| |:....:||::...:..::||
 Frog   652 PGINQRALHLLLSEVK-ERSNSWEHELSVSMVEIYNETLRDLLGSDPSNSLEIKILPGSVGELYV 715

  Fly   515 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLV 579
            .|:|:..|.....:..::......|||..|..|..||||||:..|...||.......|.|.:.||
 Frog   716 PNLTQRQVQSMEDINKILELGHKQRATEHTNLNTHSSRSHALLILTAKGRETSTGICSTGKLYLV 780

  Fly   580 DLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 640
            ||||||    |.....|:.|.:.||||||.|.:|..||..:|.||||||||||:||...|..:.|
 Frog   781 DLAGSERVSRSGAAGERLREAQCINRSLSALGDVFSALRSQQGHIPYRNSKLTYLLQEPLSRDGK 845

  Fly   641 TLMFINVSPFQDCFQESVKSLRFAASVNSCKM---TKAKRNRYLNNSVANSST 690
            .|:.:.|||.:....||:.||||...|.:.::   |:......:|..:|.|.:
 Frog   846 ALLLLQVSPAEKNINESLCSLRFGDRVRAVELGAPTRKIEQLPVNAELAESES 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncdNP_001287592.1 KISc_C_terminal 346..672 CDD:276817 138/342 (40%)
KISc 348..678 CDD:214526 137/349 (39%)
kifc3XP_012816498.1 BBP1_C 182..307 CDD:291921
CENP-F_leu_zip 213..323 CDD:287450
KISc_C_terminal 550..877 CDD:276817 138/342 (40%)
KISc 552..881 CDD:214526 136/344 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D181609at33208
OrthoFinder 1 1.000 - - FOG0000325
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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