DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncd and kifc1

DIOPT Version :9

Sequence 1:NP_001287592.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_001038419.1 Gene:kifc1 / 30453 ZFINID:ZDB-GENE-000208-21 Length:618 Species:Danio rerio


Alignment Length:597 Identity:224/597 - (37%)
Similarity:319/597 - (53%) Gaps:71/597 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 SQRLVRPAAPSSITATAVKRPPVTRPAP----RAAGGAAAKKPAGTG----AAASSGAAAAAPKR 189
            |||. ||||     :.|..|.||...||    |..|.|........|    ..|:...|.||..|
Zfish    42 SQRF-RPAA-----SVAPPRRPVAVKAPVKPLRPTGAATVAAAPARGDQRRPVAAVAKATAAVSR 100

  Fly   190 IAPYDFKARFHDLLEKHKVLKTKYEKQTEDMGELESMPQQLEETQNKLIETESSLKNTQSDNECL 254
            ...:|.|.:..|:..|.:..::|          ::::.|:.|..::.:.:.:....:.:.:|..|
Zfish   101 RPGWDLKGKVSDMEAKVQNYQSK----------VKTVNQENECLKDSIAKVQRRTADIEQENNGL 155

  Fly   255 QRQV---KQHTAKIETITSTLGRTKEELSELQAIHEKVKTEHAALSTEVVHLRQ----------- 305
            :|::   ::...|:.|:...|..|.:|...||....|:..||..|.....||..           
Zfish   156 RRRLGDCEKELVKLATVKDDLEHTTKERDGLQKDLSKLTEEHKVLEGLRDHLESELRNIQTQLAI 220

  Fly   306 RTEELLRCNE--QQAAEL-----ETC---KEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLE 360
            :|..|.||.:  :::.||     ||.   :|:|....|||::||||:.:|:||||||||:||.|.
Zfish   221 QTSALGRCQDSLKESQELARNLEETVARQREELHLGEMERRKLHNTIQELKGNIRVFCRVRPLLT 285

  Fly   361 SEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQI-------FSFDQVFHPLSSQSDIFEMVSP 417
            ..::.:. .....||...:.|..::   :|..|:..       ||||:||.|.||||::||.:|.
Zfish   286 GNQSDILHIQLPPHDNKALTLAKME---ESHTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEEISL 347

  Fly   418 LIQSALDGYNICIFAYGQTGSGKTYTMDG--VPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKAT 480
            |:||||||||:|.|||||||||||:||:|  ..|..|||||.|..:|.|.:.....||:|...|:
Zfish   348 LVQSALDGYNVCCFAYGQTGSGKTFTMEGGEQEELWGVIPRAVQQIFKSAKALSEQGWQYSFTAS 412

  Fly   481 FLEIYNEVLYDLL----SNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRAT 541
            |:|||||.|.|||    .|::.:.|||...|  |:|.|:|:|.:.|.:.:.:.:|:..|..||:|
Zfish   413 FVEIYNETLRDLLYKGKPNKRPEHEIRKVSN--NEITVTNLTYQKVNNEDEVHNLIMLANQNRST 475

  Fly   542 ASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRS 602
            |.|..|:.|||||:|.:|::.|.:..:.......:.||||||||    |.....|..|...||.|
Zfish   476 ARTCMNDHSSRSHSVFQLDIEGENTARDSKCKSMLCLVDLAGSERVQKSQSQGERFKEMTAINSS 540

  Fly   603 LSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 667
            |:.|..||.||..|...:||||||||:||...||||||||||.|:||.::.|.||:.|||||:.|
Zfish   541 LTNLGIVIAALANKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPEEESFSESLNSLRFASKV 605

  Fly   668 NSCKMTKAKRNR 679
            |.|.:..|..|:
Zfish   606 NDCVIGTASANK 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncdNP_001287592.1 KISc_C_terminal 346..672 CDD:276817 159/343 (46%)
KISc 348..678 CDD:214526 159/347 (46%)
kifc1NP_001038419.1 SMC_N <101..>275 CDD:330553 43/183 (23%)
KISc_C_terminal 271..610 CDD:276817 159/343 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 253 1.000 Domainoid score I2034
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H83229
Inparanoid 1 1.050 322 1.000 Inparanoid score I2493
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D181609at33208
OrthoFinder 1 1.000 - - FOG0000325
OrthoInspector 1 1.000 - - oto39873
orthoMCL 1 0.900 - - OOG6_101893
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1242
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.870

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