DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncd and Kif21a

DIOPT Version :9

Sequence 1:NP_001287592.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_038934825.1 Gene:Kif21a / 300158 RGDID:1305126 Length:1681 Species:Rattus norvegicus


Alignment Length:394 Identity:135/394 - (34%)
Similarity:182/394 - (46%) Gaps:75/394 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 RIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF-EMV 415
            ||||.|..|:...|  ||.....|..|.|      .|.|    .|:||.||...|.|..|: :.:
  Rat    19 RIRPQLAKEKIEGCHICTSVTPGEPQVFL------GKDK----AFTFDYVFDIDSQQEQIYTQCI 73

  Fly   416 SPLIQSALDGYNICIFAYGQTGSGKTYTM------DGVPESVGVIPRTVDLLFDSIRGYRNLGW- 473
            ..||:...:|||..:|||||||:||||||      :.:.|..|:|.|.|..||.||...:.... 
  Rat    74 EKLIEGCFEGYNATVFAYGQTGAGKTYTMGTGFDVNIMEEEQGIISRAVKHLFKSIEEKKTSAIK 138

  Fly   474 ------EYEIKATFLEIYNEVLYDL------LSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 526
                  |:::.|.|||:|||.:.||      :..:.|...||:.:::...||...:|..||....
  Rat   139 NGVPPPEFKVNAQFLELYNEEVLDLFDTTRDIDAKNKKSNIRIHEDSTGGIYTVGVTTRTVNTEP 203

  Fly   527 HLRHLMHTAKMNRATASTAGNERSSRSHA-------------------VTKLELIGRHAEKQEIS 572
            .:...:....::|.||||..|.:||||||                   ||..:::....:..|..
  Rat   204 EMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQTDAENVTDNKMVSESPQMNEFE 268

  Fly   573 --VGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQ---DHIPYRNSKLT 628
              ....:.|||||||..|    |..|..|..:||..|..|.|||.||..|.   .|:|||:||||
  Rat   269 TLTAKFHFVDLAGSERLKRTGATGERAKEGISINCGLLALGNVISALGDKSKRATHVPYRDSKLT 333

  Fly   629 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVA----NSS 689
            .||..||||||:|:|...|||....|.|::.:|::           |.|.|.:.|.|.    .:|
  Rat   334 RLLQDSLGGNSQTIMIACVSPSDRDFMETLNTLKY-----------ANRARNIKNKVMVNQDRAS 387

  Fly   690 TQSN 693
            .|.|
  Rat   388 QQIN 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncdNP_001287592.1 KISc_C_terminal 346..672 CDD:276817 127/367 (35%)
KISc 348..678 CDD:214526 128/373 (34%)
Kif21aXP_038934825.1 KISc_KIF4 18..376 CDD:276823 130/377 (34%)
SbcC 348..1030 CDD:223496 15/55 (27%)
SMC_prok_B <649..>852 CDD:274008
Rcc_KIF21A 942..1023 CDD:410204
WD40 1346..1659 CDD:238121
WD40 repeat 1397..1456 CDD:293791
WD40 repeat 1462..1497 CDD:293791
WD40 repeat 1502..1546 CDD:293791
WD40 repeat 1554..1587 CDD:293791
WD40 repeat 1594..1630 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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