DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncd and Kifc1

DIOPT Version :9

Sequence 1:NP_001287592.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_001005878.1 Gene:Kifc1 / 294286 RGDID:1359118 Length:693 Species:Rattus norvegicus


Alignment Length:726 Identity:251/726 - (34%)
Similarity:360/726 - (49%) Gaps:116/726 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PIKTVLPTDRIRAGLGGGAAGAGAFNVNANQTYCGNLLPPLSRDLNNLPQVLERRGGGARAASPE 81
            |::|.:.....||.|         ..|..|......|:...||  ..||....:||       |:
  Rat    20 PVRTTVDMQAQRAPL---------MEVKRNLELSTTLVKSSSR--LPLPGSRLKRG-------PD 66

  Fly    82 PMKLGHRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSKVSRLGGALTVSSQRLVRPAAPSSIT 146
            .|:.|.....:|:|....:     .|...:.|..|.:        .|::.::|:..|...|...:
  Rat    67 QMEDGLEPAKKRTRGMGTV-----TKVDTSRPRGPPL--------SAVSTAAQKGPRKTGPRGCS 118

  Fly   147 ATAVKRPPVTR---PAPRAAGGAAAKKPAGTGAAASSGAAAAAPKRIAPYDFKARFHDLLEKHKV 208
            |..    ||.|   |||    .|.|:||   |.:.:...|...|.:...:|.|.:..||   |:.
  Rat   119 AVG----PVLRNQKPAP----AAPAQKP---GTSTAPAVAGKKPGKRPAWDLKGQLCDL---HEE 169

  Fly   209 LKTKYEK-QTEDMGELESMPQQLEETQNKLIETESSLKNTQSDNECLQRQVKQHTAKIET----- 267
            ||...|| ||.|. |.:.:.:||.|.|.:.....:.....:.:...::|:.:|...|:||     
  Rat   170 LKQYREKTQTLDR-ENQGLREQLREVQEQATTLGTERNTLEEELASVRRRAEQSQQKLETLGARV 233

  Fly   268 --ITSTLGRTKEEL-SELQAIHEKVKTEHAALSTEV-----------VHLRQRTEELLRCNEQQA 318
              :...|| |||.| .|||....:::.|.:.|||::           ..|.....|:|...::.|
  Rat   234 LELEECLG-TKERLVQELQTERLQLQEERSTLSTQLEEREREFQASEAALSSSRAEVLCLRQKTA 297

  Fly   319 AELETCKEQ---LFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEE----------------- 363
            |::....||   |:...|||:.|||.:.:|:||||||||:||.||.|.                 
  Rat   298 AQVTLLAEQGDRLYGLEMERRRLHNQLQELKGNIRVFCRVRPVLEGESTPSPGFLVFPPGPAGPS 362

  Fly   364 ---NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDG 425
               .|:|.:.:....||:      .:|.:...:..||||:||.|.|.|.::||.:|.|:||||||
  Rat   363 DPPTRLCLSRSDDRRSTL------TRAPAAATRHDFSFDRVFPPGSKQEEVFEEISMLVQSALDG 421

  Fly   426 YNICIFAYGQTGSGKTYTMD----GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYN 486
            |.:|||||||||||||:||:    |.|:..|:|||.:..||...:.....||.|...|:::||||
  Rat   422 YPVCIFAYGQTGSGKTFTMEGGPRGDPQLEGLIPRAMRHLFSVAQEMSGQGWTYSFVASYVEIYN 486

  Fly   487 EVLYDLLSNEQK-----DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 546
            |.:.|||:...:     |.|||.|.....::.|:|.....|.....:..|:|.|:.|||.|.||.
  Rat   487 ETVRDLLATGTRKGQGGDCEIRRAGPGSEELTVTNARYVPVSCEKEVEALLHLAQQNRAVARTAQ 551

  Fly   547 NERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE--------SPKTSTRMTETKNINRSL 603
            ||||||||:|.:|::.|.||.:.......:|||||||||        .|....|:.||:.||.||
  Rat   552 NERSSRSHSVFQLQISGEHAARGLQCGAPLNLVDLAGSERLDPGLTLGPGERDRLRETQAINSSL 616

  Fly   604 SELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVN 668
            |.|..||:||..|:.|:||||||||:||..||||::|.|||:|:||.::...||:.|||||:.||
  Rat   617 STLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVN 681

  Fly   669 SCKMTKAKRNR 679
            .|.:..|:.|:
  Rat   682 QCVIGTAQANK 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncdNP_001287592.1 KISc_C_terminal 346..672 CDD:276817 159/362 (44%)
KISc 348..678 CDD:214526 159/366 (43%)
Kifc1NP_001005878.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24 1/3 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..156 32/140 (23%)
Lebercilin 158..325 CDD:292252 49/171 (29%)
SYCE1 190..319 CDD:291886 33/129 (26%)
KISc_C_terminal 328..685 CDD:276817 159/362 (44%)
KISc 330..686 CDD:214526 158/361 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 250 1.000 Domainoid score I2050
eggNOG 1 0.900 - - E2759_KOG0239
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H83229
Inparanoid 1 1.050 331 1.000 Inparanoid score I2356
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D181609at33208
OrthoFinder 1 1.000 - - FOG0000325
OrthoInspector 1 1.000 - - oto97866
orthoMCL 1 0.900 - - OOG6_101893
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1242
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.730

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