DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncd and Kif20b

DIOPT Version :9

Sequence 1:NP_001287592.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_898867.1 Gene:Kif20b / 240641 MGIID:2444576 Length:1774 Species:Mus musculus


Alignment Length:444 Identity:123/444 - (27%)
Similarity:192/444 - (43%) Gaps:112/444 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 IRVFCRIRPPLESEENRMC--CTWTYHDESTV--ELQSIDAQAKSKMGQQI---FSFDQVFHPLS 406
            ::|..||||..:||:....  |......:|.:  :.|||......|...|:   |||.:||.|.:
Mouse    59 LQVCLRIRPFTQSEKEHEAEGCVQVLDSQSVLLKDPQSILGHLSEKSSGQVAQKFSFSKVFGPET 123

  Fly   407 SQSDIFE--MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI--RG 467
            ||.:.|.  ::.| ::..|:|::..||.||.|.||||||..|..|::|::|||:::||||:  |.
Mouse   124 SQKEFFLGCIMQP-VKDLLEGHSRLIFTYGLTNSGKTYTFQGTEENIGILPRTLNVLFDSLQERL 187

  Fly   468 YRNLGW----------------------------------------------------------- 473
            |..:.:                                                           
Mouse   188 YTKMSFKPHRCREYLKLSSDQEKEESANKNTLLRQIKEVTIHNDSYDVLCGHLTNSLTIPEFEES 252

  Fly   474 --------------EYEIKATFLEIYNEVLYDLL----SNEQKDMEIRMAKNNKNDIYVSNITEE 520
                          :|.:..:|.|||||.:|||.    |..||...:|::::.|...::.::...
Mouse   253 VNSCDQSSLNVDNIKYSVWVSFFEIYNESIYDLFVPVSSKFQKRKMLRLSQDIKGYSFIKDLQWV 317

  Fly   521 TVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI----SVGSINLVDL 581
            .|.|......|:.....:::.|.|..|..|||||::..:.::  ..|..||    .|..::|.||
Mouse   318 QVSDSKEAYRLLKLGVKHQSVAFTKLNNASSRSHSIFTIRIL--QIEDSEIPRVTRVSELSLCDL 380

  Fly   582 AGSE-SPKTST---RMTETKNINRSLSELTNVILAL----LQKQDHIPYRNSKLTHLLMPSLGGN 638
            |||| |.||..   |:.|..|||.||..|...|..|    ..|..|:|:|.|||||.......|.
Mouse   381 AGSERSMKTQNEGERLREAGNINTSLLTLGKCINVLKNSEKSKVQHVPFRESKLTHYFQSFFTGK 445

  Fly   639 SKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQS 692
            .|..|.||:|.....:.|::..|:|:        |.|:| .|:.:::::|..:|
Mouse   446 GKICMIINISQSCSAYDETLNVLKFS--------TTAQR-VYVPDTLSSSQEKS 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncdNP_001287592.1 KISc_C_terminal 346..672 CDD:276817 117/422 (28%)
KISc 348..678 CDD:214526 119/428 (28%)
Kif20bNP_898867.1 KISc_KIF23_like 58..475 CDD:276819 118/426 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 538..557
Smc 627..1492 CDD:224117
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 740..799
Necessary and sufficient for interaction with SHTN1. /evidence=ECO:0000269|PubMed:23864681 1002..1059
PTZ00108 <1455..1741 CDD:240271
Interaction with PIN1. /evidence=ECO:0000250|UniProtKB:Q96Q89 1514..1774
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1625..1663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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